Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GMDBEJKD_110 | 60094 | 62019 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| GMDBEJKD_138 | 37399 | 38289 | CblA-1 | ARO:3002999 | CblA-1 | 96.28 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GMDBEJKD_110 | 60094 | 62019 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GMDBEJKD_110 | 60094 | 62016 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| GMDBEJKD_138 | 37399 | 38286 | cblA | CblA family class A beta-lactamase | BLASTX | 96.28 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GMDBEJKD_1 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_2 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_3 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_4 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_5 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_6 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_7 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_8 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_9 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_13 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_24 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_35 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_46 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_57 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_67 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_78 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_89 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_98 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_109 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_110 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_119 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_129 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_132 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_133 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_134 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_135 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_136 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_137 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_138 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_139 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_140 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_141 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_142 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_143 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_144 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_145 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_146 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_147 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_148 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_149 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_150 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_151 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_152 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_153 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_154 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_155 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_156 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_157 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_158 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_159 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_160 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_161 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_162 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_163 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_164 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_165 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_166 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_167 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_168 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_169 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_170 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_171 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_172 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_173 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_174 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_175 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_176 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_177 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_178 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_179 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_180 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_181 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_182 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_183 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_184 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_185 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_186 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_187 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_189 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_190 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_191 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_192 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_193 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_194 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_195 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_196 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_197 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_198 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_199 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_200 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_201 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_202 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_203 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_204 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_205 | 0.0 | 1.0 | 0.0 |
| GMDBEJKD_206 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_208 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_209 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_210 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_211 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_212 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_213 | 1.0 | 0.0 | 1.0 |
| GMDBEJKD_214 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GMDBEJKD_13 | 24924 | 41038 | False | Unknown | VOG0298, |
| GMDBEJKD_135 | 42177 | 51374 | False | Unknown | VOG3992, |
| GMDBEJKD_142 | 17008 | 28676 | False | Siphoviridae | VOG7268, |
| GMDBEJKD_161 | 10235 | 17806 | False | Siphoviridae | VOG4544, |
Phigaro v2.4.0 (Database: Jan. 2024 release)