Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CAHFDLOE_261 | 57785 | 59710 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| CAHFDLOE_259 | 36181 | 37386 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CAHFDLOE_261 | 57785 | 59710 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CAHFDLOE_259 | 35647 | 36156 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| CAHFDLOE_261 | 57785 | 59707 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| CAHFDLOE_259 | 36184 | 37386 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CAHFDLOE_27 | 468 | 1048 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CAHFDLOE_1 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_2 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_3 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_4 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_5 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_6 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_7 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_9 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_10 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_11 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_12 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_13 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_14 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_15 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_16 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_17 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_18 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_19 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_20 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_21 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_22 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_23 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_24 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_25 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_26 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_27 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_35 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_46 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_57 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_68 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_79 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_90 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_101 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_112 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_113 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_124 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_135 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_146 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_157 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_168 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_179 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_190 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_201 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_212 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_223 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_224 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_235 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_246 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_255 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_256 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_257 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_258 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_259 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_260 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_261 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_262 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_263 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_264 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_265 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_266 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_267 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_268 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_269 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_270 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_271 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_272 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_273 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_274 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_275 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_276 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_277 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_278 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_279 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_280 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_281 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_282 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_283 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_284 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_285 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_286 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_287 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_288 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_289 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_290 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_291 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_292 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_293 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_294 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_295 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_296 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_297 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_298 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_299 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_300 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_301 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_302 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_303 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_304 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_305 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_306 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_307 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_308 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_309 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_310 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_311 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_312 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_313 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_314 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_315 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_316 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_317 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_318 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_319 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_320 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_321 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_322 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_323 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_324 | 1.0 | 0.0 | 1.0 |
| CAHFDLOE_325 | 0.0 | 1.0 | 0.0 |
| CAHFDLOE_326 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)