Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LNEPBKDE_227 | 9691 | 10896 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| LNEPBKDE_239 | 3801 | 5774 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LNEPBKDE_239 | 3801 | 5726 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LNEPBKDE_227 | 9157 | 9666 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| LNEPBKDE_239 | 3804 | 5726 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LNEPBKDE_227 | 9694 | 10896 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LNEPBKDE_37 | 95 | 675 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LNEPBKDE_1 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_2 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_3 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_4 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_5 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_7 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_8 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_9 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_10 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_11 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_12 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_13 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_14 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_15 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_16 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_17 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_18 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_19 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_20 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_21 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_22 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_23 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_24 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_25 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_26 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_27 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_28 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_29 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_30 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_31 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_32 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_33 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_34 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_35 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_36 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_37 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_38 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_46 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_57 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_68 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_79 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_90 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_101 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_112 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_113 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_124 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_135 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_146 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_157 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_158 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_159 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_160 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_161 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_162 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_163 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_164 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_165 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_166 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_167 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_168 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_169 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_170 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_171 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_172 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_173 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_174 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_175 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_176 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_177 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_178 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_179 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_180 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_181 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_182 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_183 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_184 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_185 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_186 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_187 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_188 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_189 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_190 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_191 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_192 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_193 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_194 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_195 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_196 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_197 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_198 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_199 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_200 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_201 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_202 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_203 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_204 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_205 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_206 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_207 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_208 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_209 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_210 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_211 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_212 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_213 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_214 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_215 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_216 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_217 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_218 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_219 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_220 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_221 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_222 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_223 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_224 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_225 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_226 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_227 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_228 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_229 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_230 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_231 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_232 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_233 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_234 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_235 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_236 | 0.0 | 1.0 | 0.0 |
| LNEPBKDE_237 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_238 | 1.0 | 0.0 | 1.0 |
| LNEPBKDE_239 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)