Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CDHNIINP_79 | 60803 | 61540 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
| CDHNIINP_125 | 1857 | 3782 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CDHNIINP_79 | 60803 | 61540 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | U18931 |
| CDHNIINP_125 | 1857 | 3782 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CDHNIINP_79 | 60803 | 61537 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_002292226.1 |
| CDHNIINP_125 | 1857 | 3779 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CDHNIINP_133 | 41337 | 42917 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CDHNIINP_37 | 445 | 1025 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CDHNIINP_1 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_2 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_3 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_4 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_5 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_6 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_7 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_8 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_9 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_10 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_11 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_12 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_13 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_14 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_15 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_16 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_17 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_18 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_19 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_20 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_21 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_22 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_23 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_24 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_25 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_26 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_27 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_28 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_29 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_30 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_31 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_32 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_33 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_34 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_35 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_36 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_37 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_46 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_57 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_68 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_79 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_90 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_100 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_111 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_112 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_122 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_124 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_125 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_126 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_127 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_128 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_129 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_130 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_131 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_132 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_133 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_134 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_135 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_136 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_137 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_138 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_139 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_140 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_141 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_142 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_143 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_144 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_145 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_146 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_147 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_148 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_149 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_150 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_151 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_152 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_153 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_154 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_155 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_156 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_157 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_158 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_159 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_160 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_161 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_162 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_163 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_164 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_165 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_166 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_167 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_168 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_169 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_170 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_171 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_172 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_173 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_174 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_175 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_176 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_177 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_178 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_179 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_180 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_181 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_182 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_183 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_184 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_185 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_186 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_187 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_188 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_189 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_190 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_191 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_192 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_193 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_194 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_195 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_196 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_197 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_198 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_199 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_201 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_202 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_203 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_204 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_205 | 0.0 | 1.0 | 0.0 |
| CDHNIINP_206 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_207 | 1.0 | 0.0 | 1.0 |
| CDHNIINP_208 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CDHNIINP_1 | 130860 | 147696 | False | Unknown | VOG4720, |
| CDHNIINP_13 | 13490 | 23517 | False | Siphoviridae | VOG4552, |
| CDHNIINP_100 | 1908 | 14851 | False | Unknown | VOG4572, |
| CDHNIINP_111 | 24892 | 36883 | False | Unknown | VOG4568, |
| CDHNIINP_112 | 6269 | 10708 | False | Unknown | VOG2165, |
| CDHNIINP_134 | 12142 | 15717 | True | Unknown | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)