Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGDIBNIP_131 | 7041 | 8960 | tet(O) | ARO:3000190 | tet(O) | 99.37 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CGDIBNIP_131 | 7041 | 8960 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | M18896 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGDIBNIP_131 | 7041 | 8957 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.84 | 100.00 | WP_012669445.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGDIBNIP_1 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_2 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_12 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_22 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_33 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_40 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_51 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_62 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_73 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_84 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_95 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_96 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_97 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_98 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_99 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_100 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_101 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_102 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_103 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_104 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_105 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_106 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_107 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_108 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_109 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_110 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_111 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_112 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_113 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_114 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_115 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_116 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_117 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_118 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_119 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_120 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_121 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_122 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_123 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_124 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_125 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_126 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_127 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_128 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_129 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_130 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_131 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_132 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_133 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_134 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_135 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_136 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_137 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_139 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_140 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_141 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_142 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_143 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_144 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_145 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_146 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_148 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_149 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_150 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_151 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_152 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_153 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_154 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_155 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_156 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_157 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_158 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_159 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_160 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_161 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_162 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_163 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_164 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_165 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_166 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_167 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_168 | 0.0 | 1.0 | 0.0 |
| CGDIBNIP_170 | 1.0 | 0.0 | 1.0 |
| CGDIBNIP_173 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CGDIBNIP_1 | 171887 | 179830 | False | Unknown | VOG0083, |
| CGDIBNIP_1 | 188476 | 215112 | False | Myoviridae | VOG10250, |
Phigaro v2.4.0 (Database: Jan. 2024 release)