Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMGKPBJC_55 | 127194 | 129119 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| CMGKPBJC_11 | 43924 | 45129 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CMGKPBJC_55 | 127194 | 129119 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMGKPBJC_11 | 43390 | 43899 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| CMGKPBJC_55 | 127194 | 129116 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| CMGKPBJC_11 | 43927 | 45129 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CMGKPBJC_9 | 2027 | 3607 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CMGKPBJC_1 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_2 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_3 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_4 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_5 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_6 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_7 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_8 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_9 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_10 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_11 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_12 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_13 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_14 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_15 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_16 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_17 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_18 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_19 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_20 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_21 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_22 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_23 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_24 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_25 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_26 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_27 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_28 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_29 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_30 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_31 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_32 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_33 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_34 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_35 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_36 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_37 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_38 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_39 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_40 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_41 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_42 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_43 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_44 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_45 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_46 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_47 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_48 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_49 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_50 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_51 | 1.0 | 0.0 | 1.0 |
| CMGKPBJC_52 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_53 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_54 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_55 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_56 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_57 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_58 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_59 | 1.0 | 0.0 | 1.0 |
| CMGKPBJC_60 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_61 | 1.0 | 0.0 | 1.0 |
| CMGKPBJC_62 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_63 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_64 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_65 | 1.0 | 0.0 | 1.0 |
| CMGKPBJC_66 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_67 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_68 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_69 | 1.0 | 0.0 | 1.0 |
| CMGKPBJC_70 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_71 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_72 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_73 | 1.0 | 0.0 | 1.0 |
| CMGKPBJC_74 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_75 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_76 | 1.0 | 0.0 | 1.0 |
| CMGKPBJC_77 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_78 | 1.0 | 0.0 | 1.0 |
| CMGKPBJC_79 | 1.0 | 0.0 | 1.0 |
| CMGKPBJC_80 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_81 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_84 | 1.0 | 0.0 | 1.0 |
| CMGKPBJC_85 | 0.0 | 1.0 | 0.0 |
| CMGKPBJC_86 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CMGKPBJC_86 | 103748 | 113854 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)