Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JADPJEMP_27 | 503487 | 505406 | tet(O) | ARO:3000190 | tet(O) | 99.37 | 100.00 | M18896.2 |
| JADPJEMP_11 | 78111 | 79331 | tet(40) | ARO:3000567 | tet(40) | 99.26 | 100.00 | AM419751.1 |
| JADPJEMP_11 | 75905 | 77824 | tet(W) | ARO:3000194 | tet(W) | 98.75 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JADPJEMP_32 | 178247 | 179113 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| JADPJEMP_27 | 503487 | 505406 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | M18896 |
| JADPJEMP_11 | 78111 | 79331 | tet(40) | Doxycycline, Tetracycline | 99.75 | 100.00 | AM419751 |
| JADPJEMP_11 | 75905 | 77824 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.32 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JADPJEMP_32 | 178250 | 179113 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| JADPJEMP_27 | 503490 | 505406 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.84 | 100.00 | WP_012669445.1 |
| JADPJEMP_11 | 78111 | 79328 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 99.51 | 100.00 | WP_015573055.1 |
| JADPJEMP_11 | 75905 | 77821 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 100.00 | WP_050618045.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JADPJEMP_1 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_2 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_3 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_4 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_5 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_6 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_7 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_8 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_9 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_10 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_11 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_12 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_13 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_14 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_15 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_16 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_17 | 1.0 | 0.0 | 1.0 |
| JADPJEMP_18 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_19 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_20 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_21 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_22 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_23 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_24 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_25 | 1.0 | 0.0 | 1.0 |
| JADPJEMP_26 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_27 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_28 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_29 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_30 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_31 | 0.0 | 1.0 | 0.0 |
| JADPJEMP_32 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)