Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NLDNPLOG_139 | 170541 | 172466 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| NLDNPLOG_150 | 13153 | 14118 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NLDNPLOG_150 | 13153 | 14118 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| NLDNPLOG_150 | 13153 | 14118 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| NLDNPLOG_150 | 13153 | 14118 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| NLDNPLOG_150 | 13153 | 14118 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| NLDNPLOG_139 | 170541 | 172466 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| NLDNPLOG_60 | 71177 | 71970 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 83.54 | 98.88 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NLDNPLOG_150 | 13156 | 14118 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| NLDNPLOG_139 | 170544 | 172466 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| NLDNPLOG_60 | 71177 | 71974 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 80.45 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NLDNPLOG_12 | 70331 | 71911 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NLDNPLOG_154 | 39 | 718 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NLDNPLOG_1 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_2 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_6 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_12 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_19 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_23 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_29 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_36 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_43 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_50 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_52 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_59 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_60 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_68 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_75 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_83 | 1.0 | 0.0 | 1.0 |
| NLDNPLOG_89 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_93 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_97 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_101 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_106 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_111 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_117 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_118 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_124 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_130 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_132 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_133 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_134 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_135 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_136 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_137 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_138 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_139 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_140 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_141 | 1.0 | 0.0 | 1.0 |
| NLDNPLOG_142 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_143 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_145 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_146 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_147 | 1.0 | 0.0 | 1.0 |
| NLDNPLOG_148 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_149 | 1.0 | 0.0 | 1.0 |
| NLDNPLOG_150 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_151 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_152 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_153 | 1.0 | 0.0 | 1.0 |
| NLDNPLOG_154 | 1.0 | 0.0 | 1.0 |
| NLDNPLOG_156 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_159 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_161 | 1.0 | 0.0 | 1.0 |
| NLDNPLOG_162 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_163 | 1.0 | 0.0 | 1.0 |
| NLDNPLOG_166 | 1.0 | 0.0 | 1.0 |
| NLDNPLOG_167 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_169 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_173 | 0.0 | 1.0 | 0.0 |
| NLDNPLOG_179 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)