Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JJHDIBLI_73 | 62489 | 64414 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JJHDIBLI_73 | 62489 | 64414 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| JJHDIBLI_197 | 1808 | 2562 | cfxA6 | Unknown Beta-lactam | 87.30 | 75.70 | GQ342996 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JJHDIBLI_73 | 62489 | 64411 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| JJHDIBLI_197 | 1759 | 2703 | cfxA6 | broad-spectrum class A beta-lactamase CfxA6 | BLASTX | 80.32 | 98.44 | WP_117664257.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JJHDIBLI_17 | 111252 | 109672 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JJHDIBLI_1 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_2 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_10 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_17 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_25 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_32 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_38 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_47 | 1.0 | 0.0 | 1.0 |
| JJHDIBLI_57 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_65 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_73 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_82 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_83 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_90 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_99 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_107 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_116 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_123 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_132 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_138 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_146 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_153 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_161 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_162 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_168 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_170 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_178 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_189 | 1.0 | 0.0 | 1.0 |
| JJHDIBLI_197 | 1.0 | 0.0 | 1.0 |
| JJHDIBLI_205 | 1.0 | 0.0 | 1.0 |
| JJHDIBLI_212 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_221 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_228 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_229 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_234 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_249 | 1.0 | 0.0 | 1.0 |
| JJHDIBLI_257 | 1.0 | 0.0 | 1.0 |
| JJHDIBLI_277 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_278 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_280 | 1.0 | 0.0 | 1.0 |
| JJHDIBLI_282 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_283 | 1.0 | 0.0 | 1.0 |
| JJHDIBLI_284 | 1.0 | 0.0 | 1.0 |
| JJHDIBLI_285 | 1.0 | 0.0 | 1.0 |
| JJHDIBLI_286 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_289 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_295 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_302 | 0.0 | 1.0 | 0.0 |
| JJHDIBLI_309 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JJHDIBLI_123 | 14813 | 17249 | False | Siphoviridae | VOG6282, |
| JJHDIBLI_289 | 161174 | 169032 | False | Unknown | VOG0327, |
Phigaro v2.4.0 (Database: Jan. 2024 release)