Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JOFBEMAH_110 | 440484 | 444116 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.22 | 102.02 | NC_008618.1 |
| JOFBEMAH_154 | 354403 | 357729 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.46 | 100.09 | CP001840.1 |
| JOFBEMAH_220 | 147 | 1007 | TEM-116 | ARO:3000979 | TEM-116 | 100.00 | 100.00 | U36911.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JOFBEMAH_220 | 147 | 1007 | blaTEM-116 | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 100.00 | 100.00 | AY425988 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JOFBEMAH_220 | 147 | 1004 | blaTEM-116 | broad-spectrum class A beta-lactamase TEM-116 | ALLELEX | 100.00 | 100.00 | WP_000027050.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JOFBEMAH_220 | 1422 | 1552 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JOFBEMAH_11 | 1.0 | 0.0 | 1.0 |
| JOFBEMAH_22 | 1.0 | 0.0 | 1.0 |
| JOFBEMAH_33 | 1.0 | 0.0 | 1.0 |
| JOFBEMAH_110 | 0.0 | 1.0 | 0.0 |
| JOFBEMAH_154 | 0.0 | 1.0 | 0.0 |
| JOFBEMAH_165 | 0.0 | 1.0 | 0.0 |
| JOFBEMAH_176 | 0.0 | 1.0 | 0.0 |
| JOFBEMAH_187 | 0.0 | 1.0 | 0.0 |
| JOFBEMAH_209 | 1.0 | 0.0 | 1.0 |
| JOFBEMAH_220 | 1.0 | 0.0 | 1.0 |
| JOFBEMAH_229 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JOFBEMAH_110 | 184925 | 212232 | True | Siphoviridae | VOG5088, VOG2537, VOG2534, VOG2534, VOG1243, VOG7108, VOG4602, VOG0275, VOG1154, VOG4544, VOG0720, VOG0720, VOG6302, VOG4555, VOG4553, VOG1523, VOG1581, VOG3409, VOG4557, VOG4582, VOG4545, VOG4633, VOG4599, VOG10899, VOG4824 |
| JOFBEMAH_110 | 1264344 | 1279944 | False | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585, VOG11075, VOG2090, VOG8440, VOG0275 |
| JOFBEMAH_110 | 1356764 | 1378554 | False | Myoviridae | VOG0384, VOG4548, VOG11016, VOG5689, VOG0382, VOG0052, VOG8190, VOG2090 |
Phigaro v2.4.0 (Database: Jan. 2024 release)