Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HKJNKJIE_199 | 4237 | 5268 | vanA | ARO:3000010 | vanA | 100.00 | 100.00 | M97297.1 |
| HKJNKJIE_199 | 3623 | 4231 | vanX gene in vanA cluster | ARO:3002949 | vanX_in_vanA_cl | 100.00 | 100.00 | M97297.1 |
| HKJNKJIE_40 | 2287 | 2760 | dfrF | ARO:3002867 | dfrF | 100.00 | 95.73 | AF028812.1 |
| HKJNKJIE_199 | 2284 | 3195 | vanY gene in vanA cluster | ARO:3002955 | vanY_in_vanA_cl | 100.00 | 100.00 | M97297.1 |
| HKJNKJIE_199 | 1646 | 2131 | vanZ gene in vanA cluster | ARO:3002962 | vanZ_in_vanA_cl | 100.00 | 100.00 | M97297.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HKJNKJIE_199 | 3623 | 4231 | VanX | Vancomycin, Teicoplanin | 95.57 | 99.84 | 1_Y15708 |
| HKJNKJIE_199 | 4237 | 5268 | VanA | Vancomycin, Teicoplanin | 93.51 | 100.00 | 1_Y15704 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HKJNKJIE_199 | 4240 | 5268 | vanA | D-alanine--(R)-lactate ligase VanA | EXACTX | 100.00 | 100.00 | WP_001079845.1 |
| HKJNKJIE_199 | 3626 | 4231 | vanX-A | D-Ala-D-Ala dipeptidase VanX-A | EXACTX | 100.00 | 100.00 | WP_000402347.1 |
| HKJNKJIE_199 | 2287 | 3195 | vanY-A | D-Ala-D-Ala carboxypeptidase VanY-A | EXACTX | 100.00 | 100.00 | WP_001812592.1 |
| HKJNKJIE_199 | 1649 | 2131 | vanZ-A | glycopeptide resistance protein VanZ-A | EXACTX | 100.00 | 100.00 | WP_000516404.1 |
| HKJNKJIE_40 | 2293 | 2760 | dfrF | trimethoprim-resistant dihydrofolate reductase DfrF | BLASTX | 100.00 | 95.12 | WP_002322211.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HKJNKJIE_151 | 3188 | 3433 | GyrA | 1.10e-40 | DNA gyrase (bacterial topoisomerase II) | 82.93 | 62.12 | BAD26642 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HKJNKJIE_1 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_2 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_3 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_4 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_5 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_6 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_7 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_8 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_9 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_10 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_11 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_12 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_13 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_14 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_15 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_16 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_17 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_18 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_19 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_20 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_21 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_22 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_23 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_24 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_25 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_26 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_27 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_28 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_29 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_30 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_31 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_32 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_33 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_34 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_35 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_36 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_37 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_38 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_39 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_40 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_41 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_42 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_43 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_44 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_45 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_46 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_47 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_48 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_49 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_50 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_51 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_52 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_53 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_54 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_55 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_56 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_57 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_58 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_59 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_60 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_62 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_63 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_64 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_65 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_66 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_67 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_68 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_69 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_70 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_71 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_72 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_73 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_74 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_75 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_76 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_77 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_78 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_79 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_80 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_81 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_82 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_83 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_84 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_85 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_86 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_87 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_88 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_89 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_90 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_91 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_92 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_93 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_94 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_95 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_96 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_97 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_98 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_99 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_100 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_101 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_102 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_103 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_104 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_105 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_106 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_107 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_108 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_109 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_110 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_111 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_112 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_113 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_114 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_115 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_116 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_117 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_118 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_119 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_120 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_121 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_122 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_123 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_124 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_125 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_126 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_127 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_128 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_129 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_130 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_131 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_132 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_133 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_134 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_135 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_136 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_137 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_138 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_139 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_140 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_141 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_142 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_143 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_144 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_146 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_147 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_148 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_149 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_150 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_151 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_152 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_153 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_154 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_155 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_156 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_157 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_158 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_159 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_160 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_161 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_162 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_163 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_164 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_165 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_166 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_167 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_168 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_169 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_170 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_171 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_172 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_173 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_174 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_175 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_176 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_177 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_178 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_179 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_180 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_181 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_182 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_183 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_184 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_185 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_186 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_187 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_188 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_189 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_190 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_191 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_192 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_193 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_194 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_195 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_196 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_197 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_198 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_199 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_200 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_201 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_202 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_203 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_204 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_205 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_206 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_207 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_208 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_209 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_210 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_211 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_212 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_213 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_214 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_215 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_216 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_217 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_218 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_219 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_220 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_221 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_222 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_223 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_224 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_225 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_226 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_227 | 1.0 | 0.0 | 1.0 |
| HKJNKJIE_228 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_229 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_230 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_231 | 0.0 | 1.0 | 0.0 |
| HKJNKJIE_232 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)