Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ONBEHOIJ_35 | 44577 | 44771 | CspA | 3.98e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ONBEHOIJ_16 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_24 | 1.0 | 0.0 | 1.0 |
| ONBEHOIJ_25 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_26 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_27 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_28 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_29 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_31 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_32 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_33 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_34 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_35 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_36 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_37 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_38 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_39 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_40 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_41 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_42 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_44 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_46 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_47 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_48 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_49 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_50 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_51 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_52 | 1.0 | 0.0 | 1.0 |
| ONBEHOIJ_53 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_54 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_55 | 0.0 | 1.0 | 0.0 |
| ONBEHOIJ_57 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ONBEHOIJ_38 | 51404 | 55278 | False | Myoviridae | VOG0384, VOG10104, VOG0226 |
| ONBEHOIJ_40 | 147528 | 172300 | False | Siphoviridae | VOG4714, VOG0204, VOG0198, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG0650, VOG0275, VOG4545, VOG4545, VOG5660, VOG0198, VOG4636, VOG4237, VOG8353, VOG4995, VOG2786, VOG6495, VOG4821 |
| ONBEHOIJ_41 | 97088 | 127016 | False | Siphoviridae | VOG0866, VOG0866, VOG7887, VOG4013, VOG8294, VOG0703, VOG8917, VOG4705, VOG3390, VOG1927, VOG3462, VOG0801, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG4711, VOG4555, VOG5822, VOG6028, VOG4564, VOG0720, VOG10227, VOG4544, VOG10904, VOG1517, VOG4571, VOG4618, VOG0198 |
| ONBEHOIJ_41 | 136023 | 141626 | False | Siphoviridae | VOG4552, VOG6495, VOG4602, VOG9231, VOG3557, VOG0275 |
| ONBEHOIJ_42 | 41252 | 63031 | False | Siphoviridae | VOG8438, VOG3463, VOG3462, VOG0801, VOG6163, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866 |
| ONBEHOIJ_42 | 85049 | 94842 | False | Siphoviridae | VOG4693, VOG1183, VOG0638, VOG0686, VOG7884, VOG3307, VOG4571, VOG7910, VOG4799, VOG0514, VOG0226, VOG4955, VOG2228, VOG9469, VOG1564, VOG8520 |
Phigaro v2.4.0 (Database: Jan. 2024 release)