Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ILOKHOFA_53 | 2083 | 2277 | CspA | 3.23e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ILOKHOFA_3 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_4 | 1.0 | 0.0 | 1.0 |
| ILOKHOFA_5 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_10 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_11 | 1.0 | 0.0 | 1.0 |
| ILOKHOFA_12 | 1.0 | 0.0 | 1.0 |
| ILOKHOFA_13 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_14 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_15 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_16 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_17 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_20 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_21 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_23 | 1.0 | 0.0 | 1.0 |
| ILOKHOFA_24 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_25 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_26 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_27 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_28 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_29 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_30 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_31 | 1.0 | 0.0 | 1.0 |
| ILOKHOFA_32 | 1.0 | 0.0 | 1.0 |
| ILOKHOFA_33 | 1.0 | 0.0 | 1.0 |
| ILOKHOFA_34 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_35 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_36 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_37 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_38 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_39 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_40 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_41 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_42 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_43 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_44 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_45 | 1.0 | 0.0 | 1.0 |
| ILOKHOFA_47 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_48 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_49 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_50 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_51 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_52 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_53 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_54 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_55 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_56 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_58 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_59 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_60 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_61 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_62 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_63 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_64 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_65 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_66 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_67 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_68 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_69 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_72 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_73 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_74 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_78 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_79 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_80 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_93 | 1.0 | 0.0 | 1.0 |
| ILOKHOFA_94 | 1.0 | 0.0 | 1.0 |
| ILOKHOFA_95 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_98 | 1.0 | 0.0 | 1.0 |
| ILOKHOFA_100 | 1.0 | 0.0 | 1.0 |
| ILOKHOFA_101 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_102 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_106 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_107 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_108 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_111 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_113 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_123 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_126 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_130 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_131 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_135 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_136 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_137 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_138 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_139 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_147 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_148 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_149 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_150 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_154 | 1.0 | 0.0 | 1.0 |
| ILOKHOFA_155 | 1.0 | 0.0 | 1.0 |
| ILOKHOFA_156 | 0.0 | 1.0 | 0.0 |
| ILOKHOFA_158 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ILOKHOFA_14 | 2579 | 9276 | False | Myoviridae | VOG4544, VOG4581, VOG4841, VOG0866, VOG0198, VOG0686 |
| ILOKHOFA_60 | 19711 | 34890 | False | Siphoviridae | VOG5821, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4545 |
| ILOKHOFA_61 | 14865 | 35660 | False | Siphoviridae | VOG4887, VOG4205, VOG3463, VOG3462, VOG0801, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841 |
| ILOKHOFA_95 | 10518 | 21427 | False | Siphoviridae | VOG4693, VOG2388, VOG1183, VOG0686, VOG7884, VOG3307, VOG3307, VOG4571, VOG7910, VOG4799, VOG0514, VOG0226, VOG4955, VOG5692, VOG3478, VOG0707, VOG9469, VOG1564, VOG2124 |
| ILOKHOFA_131 | 38791 | 64358 | False | Siphoviridae | VOG8294, VOG0641, VOG0648, VOG7145, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG9503, VOG0689 |
| ILOKHOFA_131 | 73781 | 79272 | False | Siphoviridae | VOG0514, VOG6545, VOG0322, VOG0535, VOG11003, VOG10904, VOG5878, VOG8611, VOG0550 |
Phigaro v2.4.0 (Database: Jan. 2024 release)