Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KLJGIFAH_83 | 71723 | 71529 | CspA | 1.53e-27 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KLJGIFAH_10 | 1.0 | 0.0 | 1.0 |
| KLJGIFAH_22 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_52 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_53 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_56 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_64 | 1.0 | 0.0 | 1.0 |
| KLJGIFAH_65 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_66 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_68 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_69 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_70 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_71 | 1.0 | 0.0 | 1.0 |
| KLJGIFAH_72 | 1.0 | 0.0 | 1.0 |
| KLJGIFAH_73 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_74 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_75 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_76 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_77 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_79 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_80 | 1.0 | 0.0 | 1.0 |
| KLJGIFAH_81 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_82 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_83 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_84 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_85 | 0.0 | 1.0 | 0.0 |
| KLJGIFAH_86 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KLJGIFAH_53 | 120125 | 127906 | False | Myoviridae | VOG0083, VOG0382, VOG0384, VOG10104, VOG0226 |
Phigaro v2.4.0 (Database: Jan. 2024 release)