Probiotic potential risk score


ARGs VFs PGs PPRS
0011.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
PMJDBAPL_634255242746CspA8.49e-29cold shock protein84.6198.48CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
PMJDBAPL_20.01.00.0
PMJDBAPL_110.01.00.0
PMJDBAPL_180.01.00.0
PMJDBAPL_251.00.01.0
PMJDBAPL_260.01.00.0
PMJDBAPL_300.01.00.0
PMJDBAPL_330.01.00.0
PMJDBAPL_340.01.00.0
PMJDBAPL_360.01.00.0
PMJDBAPL_370.01.00.0
PMJDBAPL_380.01.00.0
PMJDBAPL_390.01.00.0
PMJDBAPL_400.01.00.0
PMJDBAPL_410.01.00.0
PMJDBAPL_420.01.00.0
PMJDBAPL_430.01.00.0
PMJDBAPL_440.01.00.0
PMJDBAPL_450.01.00.0
PMJDBAPL_460.01.00.0
PMJDBAPL_470.01.00.0
PMJDBAPL_480.01.00.0
PMJDBAPL_490.01.00.0
PMJDBAPL_501.00.01.0
PMJDBAPL_510.01.00.0
PMJDBAPL_520.01.00.0
PMJDBAPL_530.01.00.0
PMJDBAPL_541.00.01.0
PMJDBAPL_550.01.00.0
PMJDBAPL_560.01.00.0
PMJDBAPL_580.01.00.0
PMJDBAPL_590.01.00.0
PMJDBAPL_600.01.00.0
PMJDBAPL_610.01.00.0
PMJDBAPL_620.01.00.0
PMJDBAPL_630.01.00.0
PMJDBAPL_640.01.00.0
PMJDBAPL_650.01.00.0
PMJDBAPL_661.00.01.0
PMJDBAPL_670.01.00.0
PMJDBAPL_691.00.01.0
PMJDBAPL_701.00.01.0
PMJDBAPL_710.01.00.0
PMJDBAPL_720.01.00.0
PMJDBAPL_730.01.00.0
PMJDBAPL_740.01.00.0
PMJDBAPL_750.01.00.0
PMJDBAPL_761.00.01.0
PMJDBAPL_860.01.00.0
PMJDBAPL_870.01.00.0
PMJDBAPL_961.00.01.0
PMJDBAPL_970.01.00.0
PMJDBAPL_1030.01.00.0
PMJDBAPL_1150.01.00.0
PMJDBAPL_1310.01.00.0
PMJDBAPL_1370.01.00.0
PMJDBAPL_1410.01.00.0
PMJDBAPL_1420.01.00.0
PMJDBAPL_1601.00.01.0
PMJDBAPL_1610.01.00.0
PMJDBAPL_1660.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
PMJDBAPL_60371929579FalseSiphoviridaeVOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG0209, VOG4545, VOG0801, VOG3462, VOG10972, VOG0565, VOG9997, VOG4626, VOG1637, VOG0703, VOG5229
PMJDBAPL_611075238086FalseSiphoviridaeVOG0906, VOG0514, VOG0226, VOG8647, VOG0189, VOG8276, VOG0275, VOG0195, VOG9671, VOG1298, VOG7042, VOG4693, VOG0198, VOG4972, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1900, VOG0704, VOG4634, VOG1333, VOG1334
PMJDBAPL_62483216781FalseSiphoviridaeVOG1298, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG0650, VOG4548, VOG0321, VOG3478, VOG8520, VOG8520, VOG4602, VOG4821, VOG4662
PMJDBAPL_70396228631FalseSiphoviridaeVOG0727, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG10484, VOG0198, VOG3307, VOG1183, VOG8065, VOG3307, VOG1298, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements