Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OBFJBKDG_86 | 18123 | 18317 | CspA | 6.86e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OBFJBKDG_6 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_7 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_24 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_34 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_36 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_43 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_44 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_52 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_53 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_61 | 1.0 | 0.0 | 1.0 |
| OBFJBKDG_67 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_69 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_70 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_71 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_72 | 1.0 | 0.0 | 1.0 |
| OBFJBKDG_73 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_74 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_75 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_76 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_77 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_78 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_79 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_80 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_81 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_82 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_83 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_84 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_85 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_86 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_87 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_88 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_89 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_90 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_91 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_92 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_93 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_94 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_102 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_103 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_104 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_105 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_117 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_141 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_152 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_166 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_167 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_180 | 0.0 | 1.0 | 0.0 |
| OBFJBKDG_181 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OBFJBKDG_71 | 20042 | 54622 | False | Siphoviridae | VOG5070, VOG3462, VOG0801, VOG0817, VOG0725, VOG0704, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG0866, VOG3691, VOG0198, VOG3468, VOG5141, VOG3307, VOG4552, VOG0536, VOG0189, VOG3490, VOG0514, VOG0226, VOG0322, VOG0535, VOG11075, VOG1302, VOG4322, VOG0806 |
| OBFJBKDG_87 | 222009 | 254288 | False | Siphoviridae | VOG0275, VOG0195, VOG4010, VOG5280, VOG5317, VOG0686, VOG7111, VOG0198, VOG0195, VOG4841, VOG4581, VOG4544, VOG0202, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG4887, VOG4663, VOG0641, VOG0703 |
| OBFJBKDG_88 | 15678 | 39490 | False | Myoviridae | VOG0689, VOG9503, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG4711, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG2216, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845 |
Phigaro v2.4.0 (Database: Jan. 2024 release)