Probiotic potential risk score


ARGs VFs PGs PPRS
0011.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
PHLJHFHA_841812318317CspA6.86e-29cold shock protein84.6198.48CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
PHLJHFHA_270.01.00.0
PHLJHFHA_390.01.00.0
PHLJHFHA_441.00.01.0
PHLJHFHA_510.01.00.0
PHLJHFHA_520.01.00.0
PHLJHFHA_530.01.00.0
PHLJHFHA_540.01.00.0
PHLJHFHA_550.01.00.0
PHLJHFHA_560.01.00.0
PHLJHFHA_581.00.01.0
PHLJHFHA_590.01.00.0
PHLJHFHA_600.01.00.0
PHLJHFHA_610.01.00.0
PHLJHFHA_620.01.00.0
PHLJHFHA_631.00.01.0
PHLJHFHA_641.00.01.0
PHLJHFHA_651.00.01.0
PHLJHFHA_660.01.00.0
PHLJHFHA_670.01.00.0
PHLJHFHA_690.01.00.0
PHLJHFHA_700.01.00.0
PHLJHFHA_710.01.00.0
PHLJHFHA_720.01.00.0
PHLJHFHA_730.01.00.0
PHLJHFHA_740.01.00.0
PHLJHFHA_750.01.00.0
PHLJHFHA_760.01.00.0
PHLJHFHA_770.01.00.0
PHLJHFHA_780.01.00.0
PHLJHFHA_800.01.00.0
PHLJHFHA_810.01.00.0
PHLJHFHA_820.01.00.0
PHLJHFHA_830.01.00.0
PHLJHFHA_840.01.00.0
PHLJHFHA_851.00.01.0
PHLJHFHA_861.00.01.0
PHLJHFHA_871.00.01.0
PHLJHFHA_881.00.01.0
PHLJHFHA_891.00.01.0
PHLJHFHA_910.01.00.0
PHLJHFHA_920.01.00.0
PHLJHFHA_931.00.01.0
PHLJHFHA_940.01.00.0
PHLJHFHA_950.01.00.0
PHLJHFHA_960.01.00.0
PHLJHFHA_970.01.00.0
PHLJHFHA_980.01.00.0
PHLJHFHA_1010.01.00.0
PHLJHFHA_1020.01.00.0
PHLJHFHA_1030.01.00.0
PHLJHFHA_1150.01.00.0
PHLJHFHA_1160.01.00.0
PHLJHFHA_1380.01.00.0
PHLJHFHA_1390.01.00.0
PHLJHFHA_1400.01.00.0
PHLJHFHA_1510.01.00.0
PHLJHFHA_1680.01.00.0
PHLJHFHA_1690.01.00.0
PHLJHFHA_1840.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
PHLJHFHA_551991654496FalseSiphoviridaeVOG5070, VOG3462, VOG0801, VOG0817, VOG0725, VOG0704, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG0866, VOG3691, VOG0198, VOG3468, VOG5141, VOG3307, VOG4552, VOG0536, VOG0189, VOG3490, VOG0514, VOG0226, VOG0322, VOG0535, VOG11075, VOG1302, VOG4322, VOG0806
PHLJHFHA_86297412749FalseMyoviridae / SiphoviridaeVOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG0198, VOG4693, VOG7042, VOG1446
PHLJHFHA_93840638682FalseSiphoviridaeVOG0195, VOG4010, VOG5280, VOG5317, VOG0686, VOG7111, VOG0198, VOG0195, VOG4841, VOG4581, VOG4544, VOG0202, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG4887, VOG4663, VOG0641
PHLJHFHA_98297410053FalseSiphoviridaeVOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG9503

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements