Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FCFAEDKH_126 | 41109 | 41303 | CspA | 7.05e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FCFAEDKH_5 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_9 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_10 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_11 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_12 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_20 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_21 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_22 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_31 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_33 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_34 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_45 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_52 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_53 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_54 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_64 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_65 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_66 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_67 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_82 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_83 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_84 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_94 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_95 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_96 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_107 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_108 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_109 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_113 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_120 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_121 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_122 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_123 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_124 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_125 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_126 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_127 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_128 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_129 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_130 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_131 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_132 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_133 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_134 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_135 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_136 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_137 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_138 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_139 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_140 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_141 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_142 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_143 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_144 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_145 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_146 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_147 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_148 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_149 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_150 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_151 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_152 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_153 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_154 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_155 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_156 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_157 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_158 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_159 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_160 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_161 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_162 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_163 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_164 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_165 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_166 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_167 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_176 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_177 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_178 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_179 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_192 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_193 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_195 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_196 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_197 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_207 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_208 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_209 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_215 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_222 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_223 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_231 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_243 | 1.0 | 0.0 | 1.0 |
| FCFAEDKH_244 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_245 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_246 | 0.0 | 1.0 | 0.0 |
| FCFAEDKH_247 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FCFAEDKH_127 | 5624 | 31474 | False | Siphoviridae | VOG10626, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG3307, VOG0713, VOG3307, VOG0198, VOG0796, VOG10904, VOG10227, VOG0720, VOG4564, VOG7533, VOG4555, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG6163 |
| FCFAEDKH_131 | 38342 | 52012 | False | Siphoviridae | VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204, VOG0198, VOG4714 |
| FCFAEDKH_140 | 5673 | 30101 | False | Siphoviridae | VOG0195, VOG4010, VOG5280, VOG5317, VOG0686, VOG7111, VOG0198, VOG0195, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG5436, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462 |
Phigaro v2.4.0 (Database: Jan. 2024 release)