Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FLABMEHL_91 | 99772 | 99578 | CspA | 6.45e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FLABMEHL_3 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_4 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_5 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_6 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_7 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_8 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_9 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_11 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_12 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_36 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_44 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_49 | 1.0 | 0.0 | 1.0 |
| FLABMEHL_50 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_52 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_62 | 1.0 | 0.0 | 1.0 |
| FLABMEHL_63 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_64 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_65 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_67 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_68 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_69 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_70 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_71 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_72 | 1.0 | 0.0 | 1.0 |
| FLABMEHL_73 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_74 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_75 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_76 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_78 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_79 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_80 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_81 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_82 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_83 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_84 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_85 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_86 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_87 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_89 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_90 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_91 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_92 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_93 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_94 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_95 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_96 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_97 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_98 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_100 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_101 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_102 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_103 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_104 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_105 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_106 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_107 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_108 | 0.0 | 1.0 | 0.0 |
| FLABMEHL_109 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FLABMEHL_11 | 20046 | 49983 | False | Siphoviridae | VOG7200, VOG4856, VOG4856, VOG4910, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866, VOG0198, VOG0686, VOG0638, VOG5317, VOG5280, VOG5562, VOG5998 |
| FLABMEHL_44 | 33134 | 61612 | False | Siphoviridae | VOG0054, VOG1637, VOG9998, VOG4705, VOG4334, VOG4856, VOG9997, VOG1050, VOG10972, VOG3462, VOG0801, VOG0817, VOG0725, VOG0704, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG0376 |
| FLABMEHL_78 | 4884 | 32598 | False | Siphoviridae | VOG7887, VOG4013, VOG8294, VOG0703, VOG0641, VOG0648, VOG9888, VOG10608, VOG1335, VOG0083, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG9503, VOG0689 |
| FLABMEHL_94 | 6080 | 30516 | False | Myoviridae | VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG2216, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4711, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG4972 |
| FLABMEHL_94 | 36186 | 42737 | False | Siphoviridae | VOG0189, VOG4566, VOG0226, VOG0514, VOG0283, VOG0535, VOG9667, VOG3478, VOG4552 |
Phigaro v2.4.0 (Database: Jan. 2024 release)