Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NMKPALMA_12 | 53747 | 53941 | CspA | 2.93e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NMKPALMA_3 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_4 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_5 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_6 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_7 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_8 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_9 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_10 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_11 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_12 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_14 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_15 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_16 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_17 | 1.0 | 0.0 | 1.0 |
| NMKPALMA_18 | 1.0 | 0.0 | 1.0 |
| NMKPALMA_19 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_20 | 1.0 | 0.0 | 1.0 |
| NMKPALMA_21 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_22 | 1.0 | 0.0 | 1.0 |
| NMKPALMA_23 | 1.0 | 0.0 | 1.0 |
| NMKPALMA_25 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_26 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_27 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_28 | 1.0 | 0.0 | 1.0 |
| NMKPALMA_29 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_30 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_31 | 1.0 | 0.0 | 1.0 |
| NMKPALMA_32 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_34 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_58 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_68 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_75 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_83 | 1.0 | 0.0 | 1.0 |
| NMKPALMA_94 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_109 | 1.0 | 0.0 | 1.0 |
| NMKPALMA_122 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_123 | 1.0 | 0.0 | 1.0 |
| NMKPALMA_124 | 1.0 | 0.0 | 1.0 |
| NMKPALMA_125 | 1.0 | 0.0 | 1.0 |
| NMKPALMA_126 | 0.0 | 1.0 | 0.0 |
| NMKPALMA_127 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NMKPALMA_14 | 48780 | 53045 | False | Siphoviridae | VOG0535, VOG0283, VOG0514, VOG0226, VOG4566 |
| NMKPALMA_14 | 57995 | 77568 | False | Myoviridae | VOG0198, VOG4972, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG4711, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG1956, VOG1433 |
| NMKPALMA_28 | 82347 | 102504 | False | Myoviridae | VOG5722, VOG0377, VOG5721, VOG6031, VOG6524, VOG6246, VOG1026, VOG6941, VOG6036, VOG7629, VOG7628, VOG5534, VOG6540, VOG1799, VOG0648, VOG0753, VOG0054 |
| NMKPALMA_125 | 1592 | 31945 | False | Siphoviridae | VOG0065, VOG5008, VOG6163, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198, VOG3307, VOG1183, VOG3307, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321 |
Phigaro v2.4.0 (Database: Jan. 2024 release)