Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EKPCAGKJ_104 | 99772 | 99578 | CspA | 6.45e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EKPCAGKJ_3 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_4 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_5 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_6 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_7 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_8 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_9 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_10 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_12 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_14 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_15 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_35 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_38 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_48 | 1.0 | 0.0 | 1.0 |
| EKPCAGKJ_52 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_55 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_65 | 1.0 | 0.0 | 1.0 |
| EKPCAGKJ_66 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_67 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_69 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_70 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_71 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_72 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_73 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_74 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_75 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_76 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_77 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_78 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_80 | 1.0 | 0.0 | 1.0 |
| EKPCAGKJ_81 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_82 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_83 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_84 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_85 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_86 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_87 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_88 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_89 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_91 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_92 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_93 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_94 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_95 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_96 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_97 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_98 | 1.0 | 0.0 | 1.0 |
| EKPCAGKJ_99 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_100 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_102 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_103 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_104 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_105 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_106 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_107 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_108 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_109 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_110 | 0.0 | 1.0 | 0.0 |
| EKPCAGKJ_111 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EKPCAGKJ_35 | 21184 | 49662 | False | Siphoviridae | VOG8453, VOG0376, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0704, VOG0725, VOG0817, VOG0801, VOG3462, VOG10972, VOG1050, VOG9997, VOG4856, VOG4334, VOG4705, VOG9998, VOG1637 |
| EKPCAGKJ_78 | 2677 | 27510 | False | Siphoviridae | VOG7200, VOG4856, VOG4856, VOG5560, VOG3462, VOG0801, VOG6163, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866 |
| EKPCAGKJ_78 | 52770 | 65237 | False | Siphoviridae | VOG4693, VOG2388, VOG1183, VOG0686, VOG7884, VOG3307, VOG3307, VOG4571, VOG4799, VOG0514, VOG0226, VOG4955, VOG5692, VOG3478, VOG0707, VOG9469, VOG6459, VOG8214, VOG8520, VOG8520, VOG4602 |
| EKPCAGKJ_80 | 2677 | 31561 | False | Siphoviridae | VOG7200, VOG4856, VOG4856, VOG4910, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866, VOG0198, VOG0686, VOG0638, VOG5317, VOG5280, VOG5562, VOG5998 |
| EKPCAGKJ_94 | 5998 | 12549 | False | Siphoviridae | VOG0010, VOG4552, VOG3478, VOG9667, VOG0535, VOG0283, VOG0514, VOG0226, VOG4566 |
| EKPCAGKJ_94 | 18219 | 42655 | False | Myoviridae | VOG0198, VOG4972, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG4711, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG2216, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845 |
Phigaro v2.4.0 (Database: Jan. 2024 release)