Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JJAEFDPH_94 | 99772 | 99578 | CspA | 6.45e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JJAEFDPH_3 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_4 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_5 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_6 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_7 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_8 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_9 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_10 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_11 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_44 | 1.0 | 0.0 | 1.0 |
| JJAEFDPH_48 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_59 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_60 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_61 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_62 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_63 | 1.0 | 0.0 | 1.0 |
| JJAEFDPH_64 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_66 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_67 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_68 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_69 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_70 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_71 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_72 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_73 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_74 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_75 | 1.0 | 0.0 | 1.0 |
| JJAEFDPH_77 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_78 | 1.0 | 0.0 | 1.0 |
| JJAEFDPH_79 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_80 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_81 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_82 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_83 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_84 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_85 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_86 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_88 | 1.0 | 0.0 | 1.0 |
| JJAEFDPH_89 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_90 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_91 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_92 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_93 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_94 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_95 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_96 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_97 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_99 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_100 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_101 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_102 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_103 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_104 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_105 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_106 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_107 | 0.0 | 1.0 | 0.0 |
| JJAEFDPH_108 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JJAEFDPH_10 | 21184 | 49662 | False | Siphoviridae | VOG8453, VOG0376, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0704, VOG0725, VOG0817, VOG0801, VOG3462, VOG10972, VOG1050, VOG9997, VOG4856, VOG4334, VOG4705, VOG9998, VOG1637 |
| JJAEFDPH_86 | 5998 | 11727 | False | Siphoviridae | VOG0010, VOG4552, VOG3478, VOG9667, VOG0535, VOG0283, VOG0514, VOG0226 |
| JJAEFDPH_86 | 18219 | 42655 | False | Myoviridae | VOG0198, VOG4972, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG4711, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG2216, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845 |
| JJAEFDPH_88 | 9051 | 38635 | False | Siphoviridae | VOG5278, VOG5998, VOG5562, VOG5280, VOG5317, VOG0638, VOG0686, VOG0198, VOG0866, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG4910, VOG4856, VOG4856, VOG7200 |
| JJAEFDPH_105 | 65983 | 93697 | False | Siphoviridae | VOG0689, VOG9503, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1900, VOG0704, VOG4634, VOG1333, VOG1334, VOG0083, VOG1335, VOG10608, VOG9888, VOG0648, VOG0641, VOG0703, VOG8294, VOG4013 |
Phigaro v2.4.0 (Database: Jan. 2024 release)