Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPBOFDEI_137 | 162 | 647 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CPBOFDEI_137 | 162 | 647 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPBOFDEI_137 | 165 | 647 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CPBOFDEI_33 | 108001 | 107807 | CspA | 2.93e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CPBOFDEI_6 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_7 | 1.0 | 0.0 | 1.0 |
| CPBOFDEI_8 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_9 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_10 | 1.0 | 0.0 | 1.0 |
| CPBOFDEI_11 | 1.0 | 0.0 | 1.0 |
| CPBOFDEI_12 | 1.0 | 0.0 | 1.0 |
| CPBOFDEI_14 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_15 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_16 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_17 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_18 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_19 | 1.0 | 0.0 | 1.0 |
| CPBOFDEI_20 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_21 | 1.0 | 0.0 | 1.0 |
| CPBOFDEI_22 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_23 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_24 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_25 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_26 | 1.0 | 0.0 | 1.0 |
| CPBOFDEI_27 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_28 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_29 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_30 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_31 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_32 | 1.0 | 0.0 | 1.0 |
| CPBOFDEI_33 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_34 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_36 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_37 | 1.0 | 0.0 | 1.0 |
| CPBOFDEI_38 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_39 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_40 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_41 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_42 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_43 | 1.0 | 0.0 | 1.0 |
| CPBOFDEI_44 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_59 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_76 | 1.0 | 0.0 | 1.0 |
| CPBOFDEI_77 | 1.0 | 0.0 | 1.0 |
| CPBOFDEI_80 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_94 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_96 | 1.0 | 0.0 | 1.0 |
| CPBOFDEI_107 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_114 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_117 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_126 | 0.0 | 1.0 | 0.0 |
| CPBOFDEI_137 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CPBOFDEI_12 | 7252 | 37605 | False | Siphoviridae | VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG3307, VOG1183, VOG3307, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG6163, VOG5008 |
| CPBOFDEI_40 | 48766 | 53031 | False | Siphoviridae | VOG0535, VOG0283, VOG0514, VOG0226, VOG4566 |
| CPBOFDEI_40 | 57981 | 77554 | False | Myoviridae | VOG0198, VOG4972, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG4711, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG1956, VOG1433 |
| CPBOFDEI_96 | 26287 | 46444 | False | Myoviridae | VOG0054, VOG0753, VOG0648, VOG1799, VOG6540, VOG5534, VOG7628, VOG7629, VOG6036, VOG6941, VOG1026, VOG6246, VOG6524, VOG6031, VOG5721, VOG0377, VOG5722 |
Phigaro v2.4.0 (Database: Jan. 2024 release)