Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CCLCFCCI_58 | 12287 | 12093 | CspA | 3.88e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CCLCFCCI_3 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_13 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_25 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_26 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_40 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_50 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_55 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_56 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_58 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_60 | 1.0 | 0.0 | 1.0 |
| CCLCFCCI_61 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_62 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_63 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_65 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_66 | 1.0 | 0.0 | 1.0 |
| CCLCFCCI_67 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_69 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_70 | 1.0 | 0.0 | 1.0 |
| CCLCFCCI_71 | 1.0 | 0.0 | 1.0 |
| CCLCFCCI_72 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_73 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_74 | 1.0 | 0.0 | 1.0 |
| CCLCFCCI_75 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_76 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_77 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_78 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_80 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_81 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_82 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_83 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_84 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_85 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_86 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_87 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_88 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_89 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_91 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_92 | 1.0 | 0.0 | 1.0 |
| CCLCFCCI_93 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_94 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_95 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_96 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_97 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_98 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_99 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_100 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_102 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_103 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_104 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_105 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_106 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_107 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_108 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_110 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_111 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_114 | 1.0 | 0.0 | 1.0 |
| CCLCFCCI_115 | 1.0 | 0.0 | 1.0 |
| CCLCFCCI_116 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_117 | 1.0 | 0.0 | 1.0 |
| CCLCFCCI_118 | 1.0 | 0.0 | 1.0 |
| CCLCFCCI_142 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_147 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_152 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_174 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_175 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_176 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_190 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_200 | 1.0 | 0.0 | 1.0 |
| CCLCFCCI_201 | 0.0 | 1.0 | 0.0 |
| CCLCFCCI_202 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CCLCFCCI_65 | 29483 | 62931 | False | Siphoviridae | VOG3479, VOG4602, VOG9667, VOG10195, VOG3478, VOG0526, VOG0321, VOG0322, VOG7263, VOG4548, VOG7264, VOG4693, VOG7265, VOG0686, VOG6495, VOG4690, VOG0198, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG6163, VOG4190, VOG5070, VOG0641 |
| CCLCFCCI_69 | 178104 | 199413 | False | Siphoviridae | VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581 |
| CCLCFCCI_107 | 2551 | 28011 | False | Myoviridae | VOG0703, VOG8917, VOG3298, VOG6298, VOG10263, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4711, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG4972, VOG0198 |
| CCLCFCCI_107 | 33573 | 36793 | False | Siphoviridae | VOG4566, VOG0226, VOG0514, VOG0283 |
Phigaro v2.4.0 (Database: Jan. 2024 release)