Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OFLHDJNK_29 | 27803 | 27609 | CspA | 6.05e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OFLHDJNK_3 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_4 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_5 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_6 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_7 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_8 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_9 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_10 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_11 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_12 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_14 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_15 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_16 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_17 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_18 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_19 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_20 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_21 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_22 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_23 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_25 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_26 | 1.0 | 0.0 | 1.0 |
| OFLHDJNK_27 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_28 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_29 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_30 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_31 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_32 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_33 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_34 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_35 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_36 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_37 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_38 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_39 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_40 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_41 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_42 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_43 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_44 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_45 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_51 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_62 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_92 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_110 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_115 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_132 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_133 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_134 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_135 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_136 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_137 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_138 | 0.0 | 1.0 | 0.0 |
| OFLHDJNK_139 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OFLHDJNK_15 | 18052 | 46455 | False | Myoviridae | VOG8294, VOG0703, VOG8917, VOG6298, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4711, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG4972, VOG0198, VOG4693, VOG5341, VOG1183, VOG9927 |
| OFLHDJNK_45 | 7671 | 39171 | False | Siphoviridae | VOG9671, VOG1298, VOG1298, VOG3307, VOG1183, VOG5141, VOG0198, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0704, VOG0725, VOG0817, VOG0801, VOG3462, VOG10972, VOG1050, VOG9997, VOG4856, VOG4334, VOG4705, VOG7368, VOG9998, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)