Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IIGIHDMM_84 | 141374 | 141568 | CspA | 1.60e-27 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IIGIHDMM_30 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_35 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_62 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_63 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_64 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_65 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_66 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_68 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_69 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_70 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_71 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_72 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_73 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_74 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_75 | 1.0 | 0.0 | 1.0 |
| IIGIHDMM_77 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_79 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_80 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_81 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_82 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_83 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_84 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_85 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_86 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_88 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_90 | 0.0 | 1.0 | 0.0 |
| IIGIHDMM_91 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IIGIHDMM_83 | 21365 | 48665 | False | Siphoviridae | VOG0703, VOG1637, VOG5070, VOG8257, VOG3463, VOG3462, VOG0801, VOG6163, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581, VOG4841 |
| IIGIHDMM_83 | 70163 | 79618 | False | Siphoviridae | VOG4693, VOG1183, VOG4571, VOG7910, VOG4799, VOG0514, VOG0226, VOG4955, VOG5692, VOG0707, VOG9469, VOG1564, VOG8520, VOG8520, VOG4602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)