Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NLGGCEII_86 | 145710 | 145516 | CspA | 9.61e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NLGGCEII_3 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_4 | 1.0 | 0.0 | 1.0 |
| NLGGCEII_5 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_6 | 1.0 | 0.0 | 1.0 |
| NLGGCEII_7 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_8 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_9 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_10 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_11 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_12 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_14 | 1.0 | 0.0 | 1.0 |
| NLGGCEII_15 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_16 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_17 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_18 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_19 | 1.0 | 0.0 | 1.0 |
| NLGGCEII_20 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_21 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_22 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_23 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_25 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_26 | 1.0 | 0.0 | 1.0 |
| NLGGCEII_43 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_45 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_69 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_86 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_94 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_100 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_101 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_102 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_103 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_104 | 1.0 | 0.0 | 1.0 |
| NLGGCEII_105 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_106 | 1.0 | 0.0 | 1.0 |
| NLGGCEII_107 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_108 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_109 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_111 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_112 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_113 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_114 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_115 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_116 | 1.0 | 0.0 | 1.0 |
| NLGGCEII_117 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_118 | 0.0 | 1.0 | 0.0 |
| NLGGCEII_119 | 1.0 | 0.0 | 1.0 |
| NLGGCEII_120 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NLGGCEII_116 | 6303 | 33290 | False | Siphoviridae | VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG4545, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG0866, VOG6183, VOG0198, VOG10584 |
Phigaro v2.4.0 (Database: Jan. 2024 release)