Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EMLCJGAA_62 | 103542 | 103348 | CspA | 8.35e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EMLCJGAA_10 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_15 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_20 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_28 | 1.0 | 0.0 | 1.0 |
| EMLCJGAA_29 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_30 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_37 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_39 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_40 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_44 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_52 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_53 | 1.0 | 0.0 | 1.0 |
| EMLCJGAA_54 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_55 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_57 | 1.0 | 0.0 | 1.0 |
| EMLCJGAA_58 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_59 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_60 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_61 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_62 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_63 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_64 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_65 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_66 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_68 | 1.0 | 0.0 | 1.0 |
| EMLCJGAA_69 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_70 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_71 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_72 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_73 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_74 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_75 | 0.0 | 1.0 | 0.0 |
| EMLCJGAA_76 | 1.0 | 0.0 | 1.0 |
| EMLCJGAA_77 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EMLCJGAA_55 | 4396 | 34820 | False | Siphoviridae | VOG3622, VOG2228, VOG8611, VOG5878, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG3307, VOG7884, VOG10099, VOG3307, VOG0198, VOG6827, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG4910, VOG10593 |
| EMLCJGAA_57 | 3476 | 28828 | False | Siphoviridae | VOG8945, VOG0686, VOG0689, VOG9503, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1900, VOG0704, VOG4634, VOG1333, VOG1334, VOG0083, VOG1335, VOG10608, VOG9888, VOG0648 |
| EMLCJGAA_65 | 41545 | 66687 | False | Siphoviridae | VOG0136, VOG1637, VOG4856, VOG10972, VOG0801, VOG4545, VOG4586, VOG0207, VOG0205, VOG0204, VOG4568, VOG4556, VOG1886, VOG4581, VOG4841, VOG4693, VOG1345, VOG4570, VOG0198 |
| EMLCJGAA_66 | 5400 | 8737 | False | Siphoviridae | VOG5878, VOG1638, VOG6238, VOG7581, VOG9667, VOG4602 |
| EMLCJGAA_69 | 5104 | 23837 | False | Siphoviridae | VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG1353, VOG4713, VOG1329, VOG4555, VOG0638, VOG4564, VOG0720, VOG10227, VOG4618 |
Phigaro v2.4.0 (Database: Jan. 2024 release)