Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LJFMJCBD_51 | 103542 | 103348 | CspA | 8.35e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LJFMJCBD_6 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_11 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_12 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_14 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_26 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_29 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_40 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_41 | 1.0 | 0.0 | 1.0 |
| LJFMJCBD_42 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_43 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_44 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_46 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_47 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_48 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_49 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_50 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_51 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_52 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_53 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_54 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_55 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_57 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_58 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_59 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_60 | 0.0 | 1.0 | 0.0 |
| LJFMJCBD_61 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LJFMJCBD_43 | 4404 | 34828 | False | Siphoviridae | VOG3622, VOG2228, VOG8611, VOG5878, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG3307, VOG7884, VOG10099, VOG3307, VOG0198, VOG6827, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG4910, VOG10593 |
| LJFMJCBD_44 | 49690 | 68423 | False | Siphoviridae | VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG1353, VOG4713, VOG1329, VOG4555, VOG0638, VOG4564, VOG0720, VOG10227, VOG4618 |
| LJFMJCBD_49 | 41767 | 66909 | False | Siphoviridae | VOG0136, VOG1637, VOG4856, VOG10972, VOG0801, VOG4545, VOG4586, VOG0207, VOG0205, VOG0204, VOG4568, VOG4556, VOG1886, VOG4581, VOG4841, VOG4693, VOG1345, VOG4570, VOG0198 |
| LJFMJCBD_60 | 87470 | 93868 | False | Siphoviridae | VOG6495, VOG4602, VOG9667, VOG7581, VOG6238, VOG1638, VOG5878, VOG11077, VOG0535, VOG0322, VOG6545 |
| LJFMJCBD_60 | 98057 | 126729 | False | Siphoviridae | VOG3468, VOG0198, VOG3691, VOG8945, VOG0686, VOG0689, VOG9503, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1900, VOG0704, VOG4634, VOG1333, VOG1334, VOG0083, VOG1335, VOG10608, VOG9888, VOG0648 |
Phigaro v2.4.0 (Database: Jan. 2024 release)