Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GILEAGDG_70 | 41087 | 41281 | CspA | 7.05e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GILEAGDG_4 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_5 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_9 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_10 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_19 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_20 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_21 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_22 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_29 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_30 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_31 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_32 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_34 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_36 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_37 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_38 | 1.0 | 0.0 | 1.0 |
| GILEAGDG_39 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_40 | 1.0 | 0.0 | 1.0 |
| GILEAGDG_41 | 1.0 | 0.0 | 1.0 |
| GILEAGDG_42 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_43 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_44 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_45 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_46 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_47 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_48 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_49 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_50 | 1.0 | 0.0 | 1.0 |
| GILEAGDG_51 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_52 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_53 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_54 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_55 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_56 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_57 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_58 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_59 | 1.0 | 0.0 | 1.0 |
| GILEAGDG_60 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_61 | 1.0 | 0.0 | 1.0 |
| GILEAGDG_62 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_63 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_64 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_65 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_66 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_67 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_68 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_69 | 1.0 | 0.0 | 1.0 |
| GILEAGDG_70 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_71 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_72 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_73 | 1.0 | 0.0 | 1.0 |
| GILEAGDG_74 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_75 | 1.0 | 0.0 | 1.0 |
| GILEAGDG_76 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_77 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_78 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_79 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_80 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_81 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_82 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_83 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_84 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_88 | 1.0 | 0.0 | 1.0 |
| GILEAGDG_93 | 1.0 | 0.0 | 1.0 |
| GILEAGDG_96 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_102 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_103 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_104 | 1.0 | 0.0 | 1.0 |
| GILEAGDG_105 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_106 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_107 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_116 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_130 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_132 | 1.0 | 0.0 | 1.0 |
| GILEAGDG_133 | 1.0 | 0.0 | 1.0 |
| GILEAGDG_134 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_135 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_143 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_144 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_145 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_146 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_151 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_152 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_153 | 1.0 | 0.0 | 1.0 |
| GILEAGDG_154 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_159 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_160 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_161 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_164 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_166 | 1.0 | 0.0 | 1.0 |
| GILEAGDG_167 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_168 | 0.0 | 1.0 | 0.0 |
| GILEAGDG_169 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GILEAGDG_53 | 39501 | 52175 | False | Siphoviridae | VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204, VOG0198, VOG4714 |
| GILEAGDG_75 | 16988 | 43946 | False | Siphoviridae | VOG6140, VOG0198, VOG8945, VOG0689, VOG9503, VOG6542, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1900, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335 |
Phigaro v2.4.0 (Database: Jan. 2024 release)