Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GKNPKEJL_154 | 7661 | 7467 | CspA | 7.05e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GKNPKEJL_2 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_14 | 1.0 | 0.0 | 1.0 |
| GKNPKEJL_15 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_16 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_17 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_32 | 1.0 | 0.0 | 1.0 |
| GKNPKEJL_33 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_34 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_36 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_43 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_44 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_48 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_49 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_50 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_74 | 1.0 | 0.0 | 1.0 |
| GKNPKEJL_75 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_76 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_77 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_89 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_91 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_104 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_110 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_113 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_118 | 1.0 | 0.0 | 1.0 |
| GKNPKEJL_119 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_120 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_121 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_124 | 1.0 | 0.0 | 1.0 |
| GKNPKEJL_127 | 1.0 | 0.0 | 1.0 |
| GKNPKEJL_128 | 1.0 | 0.0 | 1.0 |
| GKNPKEJL_129 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_130 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_131 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_132 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_133 | 1.0 | 0.0 | 1.0 |
| GKNPKEJL_134 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_136 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_137 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_138 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_139 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_140 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_141 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_142 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_143 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_144 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_145 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_147 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_148 | 1.0 | 0.0 | 1.0 |
| GKNPKEJL_149 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_150 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_151 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_152 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_153 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_154 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_155 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_156 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_158 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_159 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_160 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_161 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_162 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_163 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_164 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_165 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_166 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_167 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_171 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_172 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_174 | 1.0 | 0.0 | 1.0 |
| GKNPKEJL_185 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_186 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_187 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_199 | 1.0 | 0.0 | 1.0 |
| GKNPKEJL_204 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_205 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_207 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_217 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_220 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_221 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_222 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_223 | 1.0 | 0.0 | 1.0 |
| GKNPKEJL_228 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_239 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_242 | 0.0 | 1.0 | 0.0 |
| GKNPKEJL_243 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GKNPKEJL_2 | 2149 | 31686 | False | Siphoviridae | VOG8294, VOG0641, VOG0648, VOG9888, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG6542, VOG9503, VOG0689, VOG8945, VOG0198 |
| GKNPKEJL_36 | 38667 | 51341 | False | Siphoviridae | VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204, VOG0198, VOG4714 |
Phigaro v2.4.0 (Database: Jan. 2024 release)