Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MHNMPNOD_4 | 33381 | 33575 | CspA | 4.73e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MHNMPNOD_3 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_4 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_5 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_6 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_7 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_8 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_9 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_10 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_11 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_12 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_14 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_15 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_16 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_17 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_18 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_19 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_20 | 1.0 | 0.0 | 1.0 |
| MHNMPNOD_21 | 1.0 | 0.0 | 1.0 |
| MHNMPNOD_22 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_23 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_25 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_28 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_52 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_62 | 1.0 | 0.0 | 1.0 |
| MHNMPNOD_68 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_69 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_72 | 1.0 | 0.0 | 1.0 |
| MHNMPNOD_73 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_78 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_80 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_81 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_82 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_83 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_84 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_85 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_86 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_87 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_89 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_90 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_91 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_92 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_93 | 1.0 | 0.0 | 1.0 |
| MHNMPNOD_94 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_95 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_96 | 1.0 | 0.0 | 1.0 |
| MHNMPNOD_97 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_98 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_100 | 1.0 | 0.0 | 1.0 |
| MHNMPNOD_101 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_102 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_103 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_104 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_105 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_106 | 1.0 | 0.0 | 1.0 |
| MHNMPNOD_107 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_108 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_109 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_111 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_112 | 1.0 | 0.0 | 1.0 |
| MHNMPNOD_113 | 1.0 | 0.0 | 1.0 |
| MHNMPNOD_114 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_115 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_116 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_117 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_118 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_119 | 0.0 | 1.0 | 0.0 |
| MHNMPNOD_120 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MHNMPNOD_20 | 2458 | 24066 | False | Siphoviridae | VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG0209, VOG0660, VOG4545, VOG0801, VOG3462, VOG10972, VOG0565 |
| MHNMPNOD_21 | 1549 | 23630 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG0209, VOG4545, VOG0801, VOG3462, VOG10972, VOG0565 |
| MHNMPNOD_92 | 3519 | 12531 | False | Siphoviridae | VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG3478, VOG0707, VOG8520, VOG8520, VOG4602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)