Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MHIJAMJN_37 | 3042 | 3236 | CspA | 4.12e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MHIJAMJN_5 | 1.0 | 0.0 | 1.0 |
| MHIJAMJN_6 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_7 | 1.0 | 0.0 | 1.0 |
| MHIJAMJN_8 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_27 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_28 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_29 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_30 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_31 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_32 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_33 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_34 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_35 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_36 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_37 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_38 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_39 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_40 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_41 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_42 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_43 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_44 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_45 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_47 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_48 | 1.0 | 0.0 | 1.0 |
| MHIJAMJN_49 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_50 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_51 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_52 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_53 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_54 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_55 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_56 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_58 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_59 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_60 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_61 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_62 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_63 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_64 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_65 | 1.0 | 0.0 | 1.0 |
| MHIJAMJN_66 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_67 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_68 | 1.0 | 0.0 | 1.0 |
| MHIJAMJN_69 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_70 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_72 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_73 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_74 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_75 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_76 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_77 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_78 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_79 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_81 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_95 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_100 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_102 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_109 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_110 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_121 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_136 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_137 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_138 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_139 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_145 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_146 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_158 | 0.0 | 1.0 | 0.0 |
| MHIJAMJN_162 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MHIJAMJN_30 | 26016 | 56603 | False | Siphoviridae | VOG0703, VOG8917, VOG2315, VOG4663, VOG5924, VOG4910, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG4555, VOG7533, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198, VOG3307, VOG7043, VOG1183, VOG3307, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG8222, VOG0321 |
| MHIJAMJN_52 | 21869 | 49317 | False | Siphoviridae | VOG4887, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866, VOG0198, VOG0686, VOG5317, VOG5280 |
Phigaro v2.4.0 (Database: Jan. 2024 release)