Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GALLKJMG_101 | 3042 | 3236 | CspA | 4.12e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GALLKJMG_76 | 8805 | 9795 | repUS67 | 1008 / 1039 | 85.42 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GALLKJMG_3 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_4 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_5 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_6 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_7 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_8 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_9 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_10 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_11 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_14 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_15 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_16 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_21 | 1.0 | 0.0 | 1.0 |
| GALLKJMG_22 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_23 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_24 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_25 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_26 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_31 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_35 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_40 | 1.0 | 0.0 | 1.0 |
| GALLKJMG_41 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_42 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_45 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_47 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_50 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_53 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_54 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_55 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_56 | 1.0 | 0.0 | 1.0 |
| GALLKJMG_57 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_63 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_64 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_65 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_66 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_73 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_74 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_75 | 1.0 | 0.0 | 1.0 |
| GALLKJMG_76 | 1.0 | 0.0 | 1.0 |
| GALLKJMG_77 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_78 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_79 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_81 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_82 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_83 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_84 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_85 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_86 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_87 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_88 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_89 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_90 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_92 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_93 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_94 | 1.0 | 0.0 | 1.0 |
| GALLKJMG_95 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_96 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_97 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_98 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_99 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_100 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_101 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_103 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_104 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_105 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_106 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_107 | 1.0 | 0.0 | 1.0 |
| GALLKJMG_108 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_109 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_110 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_111 | 0.0 | 1.0 | 0.0 |
| GALLKJMG_112 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GALLKJMG_76 | 18197 | 36012 | False | Unknown | VOG6031, VOG6524, VOG6246, VOG1026, VOG6941, VOG6036, VOG7629, VOG7628, VOG5534, VOG6540, VOG10609, VOG9226, VOG0648, VOG0753, VOG0054 |
| GALLKJMG_87 | 6550 | 37117 | False | Siphoviridae | VOG0321, VOG8222, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG3307, VOG1183, VOG7043, VOG3307, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG7533, VOG4555, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG4910, VOG5924, VOG4663, VOG2315, VOG8917 |
| GALLKJMG_95 | 17091 | 44539 | False | Siphoviridae | VOG4010, VOG5280, VOG5317, VOG0686, VOG0198, VOG0866, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG4887 |
Phigaro v2.4.0 (Database: Jan. 2024 release)