Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EPJBANNB_57 | 483770 | 483964 | CspA | 3.37e-27 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EPJBANNB_35 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_36 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_42 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_48 | 1.0 | 0.0 | 1.0 |
| EPJBANNB_49 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_50 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_51 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_52 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_53 | 1.0 | 0.0 | 1.0 |
| EPJBANNB_54 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_55 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_57 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_58 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_59 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_60 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_61 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_62 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_65 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_66 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_68 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_69 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_70 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_71 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_72 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_73 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_74 | 0.0 | 1.0 | 0.0 |
| EPJBANNB_75 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EPJBANNB_58 | 47309 | 57124 | False | Myoviridae | VOG0382, VOG0384, VOG10104, VOG0226, VOG4564, VOG0052 |
| EPJBANNB_62 | 149142 | 173268 | False | Siphoviridae | VOG0866, VOG4841, VOG4581, VOG9312, VOG0866, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG0209, VOG6163, VOG0801, VOG3462, VOG5560, VOG8438, VOG4334, VOG4705, VOG0641, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)