Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EACDFBGG_128 | 17968 | 18162 | CspA | 3.81e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EACDFBGG_3 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_4 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_5 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_6 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_7 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_8 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_10 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_11 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_12 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_14 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_15 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_16 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_17 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_18 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_19 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_20 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_21 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_22 | 1.0 | 0.0 | 1.0 |
| EACDFBGG_23 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_25 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_26 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_27 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_28 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_29 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_30 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_31 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_32 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_33 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_34 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_37 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_38 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_39 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_40 | 1.0 | 0.0 | 1.0 |
| EACDFBGG_41 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_49 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_55 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_56 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_86 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_99 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_110 | 1.0 | 0.0 | 1.0 |
| EACDFBGG_119 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_121 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_122 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_123 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_124 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_126 | 1.0 | 0.0 | 1.0 |
| EACDFBGG_127 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_128 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_129 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_130 | 1.0 | 0.0 | 1.0 |
| EACDFBGG_131 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_132 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_133 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_134 | 0.0 | 1.0 | 0.0 |
| EACDFBGG_135 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EACDFBGG_28 | 20625 | 44853 | False | Siphoviridae | VOG10593, VOG0725, VOG4205, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG0202, VOG4544, VOG4581, VOG4841, VOG0866, VOG10604, VOG0198 |
| EACDFBGG_34 | 28409 | 49931 | False | Siphoviridae | VOG0641, VOG5008, VOG3462, VOG0801, VOG4545, VOG0725, VOG0799, VOG0724, VOG1353, VOG4713, VOG1329, VOG1300, VOG4564, VOG0720, VOG10227, VOG0611, VOG4618 |
| EACDFBGG_34 | 61454 | 65027 | False | Siphoviridae | VOG4566, VOG0514, VOG6545, VOG0322, VOG0535 |
| EACDFBGG_38 | 60728 | 64513 | False | Siphoviridae | VOG11003, VOG0535, VOG0322, VOG6545, VOG0514 |
| EACDFBGG_38 | 76036 | 97029 | False | Siphoviridae | VOG4618, VOG0611, VOG10227, VOG0720, VOG4564, VOG1300, VOG1329, VOG4713, VOG1353, VOG0724, VOG0799, VOG0725, VOG4545, VOG0801, VOG3462, VOG5008 |
| EACDFBGG_49 | 5041 | 35041 | False | Siphoviridae | VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG8916, VOG1183, VOG7043, VOG3307, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG5697, VOG7533, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG0727, VOG4599, VOG5007, VOG0648 |
Phigaro v2.4.0 (Database: Jan. 2024 release)