Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IMNMOJNA_73 | 22218 | 22024 | CspA | 3.81e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IMNMOJNA_10 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_24 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_37 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_43 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_44 | 1.0 | 0.0 | 1.0 |
| IMNMOJNA_46 | 1.0 | 0.0 | 1.0 |
| IMNMOJNA_47 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_48 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_49 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_51 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_52 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_53 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_54 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_55 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_58 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_59 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_60 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_61 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_62 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_63 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_64 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_65 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_66 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_68 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_69 | 1.0 | 0.0 | 1.0 |
| IMNMOJNA_70 | 1.0 | 0.0 | 1.0 |
| IMNMOJNA_71 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_72 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_73 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_74 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_75 | 0.0 | 1.0 | 0.0 |
| IMNMOJNA_76 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IMNMOJNA_48 | 100371 | 104245 | False | Unknown | VOG0226, VOG10104 |
| IMNMOJNA_68 | 135016 | 159788 | False | Siphoviridae | VOG4714, VOG0204, VOG0198, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG0650, VOG0275, VOG4545, VOG4545, VOG5660, VOG0198, VOG4636, VOG4237, VOG8353, VOG4995, VOG2786, VOG6495, VOG4821 |
| IMNMOJNA_72 | 45417 | 50198 | False | Siphoviridae | VOG5378, VOG0275, VOG3557, VOG9231, VOG4602, VOG6495 |
| IMNMOJNA_72 | 60027 | 88635 | False | Siphoviridae | VOG4693, VOG0198, VOG4618, VOG4571, VOG1517, VOG10904, VOG4544, VOG10227, VOG0720, VOG4564, VOG6028, VOG5822, VOG4555, VOG4711, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG0801, VOG3462, VOG1927, VOG3390, VOG4705, VOG8917, VOG0703, VOG8294, VOG4013, VOG7887 |
Phigaro v2.4.0 (Database: Jan. 2024 release)