Probiotic potential risk score


ARGs VFs PGs PPRS
0011.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
CGJGNBGN_22211362211556CspA1.73e-27cold shock protein83.0898.48CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
CGJGNBGN_41.00.01.0
CGJGNBGN_50.01.00.0
CGJGNBGN_60.01.00.0
CGJGNBGN_70.01.00.0
CGJGNBGN_80.01.00.0
CGJGNBGN_90.01.00.0
CGJGNBGN_100.01.00.0
CGJGNBGN_110.01.00.0
CGJGNBGN_120.01.00.0
CGJGNBGN_140.01.00.0
CGJGNBGN_150.01.00.0
CGJGNBGN_160.01.00.0
CGJGNBGN_170.01.00.0
CGJGNBGN_180.01.00.0
CGJGNBGN_190.01.00.0
CGJGNBGN_200.01.00.0
CGJGNBGN_210.01.00.0
CGJGNBGN_220.01.00.0
CGJGNBGN_250.01.00.0
CGJGNBGN_260.01.00.0
CGJGNBGN_270.01.00.0
CGJGNBGN_280.01.00.0
CGJGNBGN_290.01.00.0
CGJGNBGN_300.01.00.0
CGJGNBGN_310.01.00.0
CGJGNBGN_380.01.00.0
CGJGNBGN_540.01.00.0
CGJGNBGN_571.00.01.0
CGJGNBGN_851.00.01.0
CGJGNBGN_861.00.01.0
CGJGNBGN_910.01.00.0
CGJGNBGN_920.01.00.0
CGJGNBGN_1080.01.00.0
CGJGNBGN_1090.01.00.0
CGJGNBGN_1141.00.01.0
CGJGNBGN_1150.01.00.0
CGJGNBGN_1170.01.00.0
CGJGNBGN_1190.01.00.0
CGJGNBGN_1200.01.00.0
CGJGNBGN_1210.01.00.0
CGJGNBGN_1220.01.00.0
CGJGNBGN_1230.01.00.0
CGJGNBGN_1240.01.00.0
CGJGNBGN_1251.00.01.0
CGJGNBGN_1260.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
CGJGNBGN_6428925875FalseSiphoviridaeVOG4693, VOG0198, VOG4618, VOG1517, VOG10904, VOG4544, VOG10227, VOG0720, VOG4564, VOG6028, VOG5822, VOG4555, VOG4711, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG0801, VOG3462
CGJGNBGN_8129471142472FalseSiphoviridaeVOG4714, VOG0198, VOG0204, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632
CGJGNBGN_1030921483FalseSiphoviridaeVOG3462, VOG0801, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG4711, VOG4555, VOG5822, VOG6028, VOG4564, VOG0720, VOG10227, VOG4544, VOG10904, VOG1517, VOG4618, VOG0198
CGJGNBGN_284447268924FalseSiphoviridaeVOG8294, VOG0703, VOG8917, VOG4705, VOG3390, VOG1927, VOG3462, VOG0801, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG4711, VOG4555, VOG5822, VOG6028, VOG4564, VOG0720, VOG10227, VOG4544, VOG10904, VOG1517
CGJGNBGN_548015389946FalseSiphoviridaeVOG8520, VOG8520, VOG1564, VOG9469, VOG2228, VOG4955, VOG0226, VOG0514, VOG4799, VOG7910, VOG4571, VOG3307, VOG7884, VOG0686, VOG0638, VOG1183, VOG4693
CGJGNBGN_54111964133743FalseSiphoviridaeVOG0866, VOG4841, VOG4581, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG6163, VOG0801, VOG3462, VOG3463

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements