Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HDLLFFKJ_63 | 7661 | 7467 | CspA | 7.05e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HDLLFFKJ_3 | 1.0 | 0.0 | 1.0 |
| HDLLFFKJ_9 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_16 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_20 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_21 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_22 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_23 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_25 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_26 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_27 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_28 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_29 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_30 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_31 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_32 | 1.0 | 0.0 | 1.0 |
| HDLLFFKJ_34 | 1.0 | 0.0 | 1.0 |
| HDLLFFKJ_36 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_37 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_38 | 1.0 | 0.0 | 1.0 |
| HDLLFFKJ_39 | 1.0 | 0.0 | 1.0 |
| HDLLFFKJ_40 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_41 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_42 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_43 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_44 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_45 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_46 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_47 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_48 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_49 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_50 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_51 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_52 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_53 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_54 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_55 | 1.0 | 0.0 | 1.0 |
| HDLLFFKJ_56 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_57 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_58 | 1.0 | 0.0 | 1.0 |
| HDLLFFKJ_59 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_60 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_61 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_62 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_63 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_64 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_65 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_66 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_67 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_68 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_69 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_70 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_71 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_72 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_73 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_74 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_75 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_76 | 1.0 | 0.0 | 1.0 |
| HDLLFFKJ_77 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_78 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_84 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_85 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_86 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_87 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_88 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_95 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_96 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_97 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_98 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_99 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_105 | 1.0 | 0.0 | 1.0 |
| HDLLFFKJ_106 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_109 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_110 | 1.0 | 0.0 | 1.0 |
| HDLLFFKJ_118 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_119 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_126 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_133 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_134 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_135 | 1.0 | 0.0 | 1.0 |
| HDLLFFKJ_136 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_141 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_147 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_161 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_162 | 1.0 | 0.0 | 1.0 |
| HDLLFFKJ_163 | 0.0 | 1.0 | 0.0 |
| HDLLFFKJ_165 | 1.0 | 0.0 | 1.0 |
| HDLLFFKJ_167 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HDLLFFKJ_54 | 39501 | 52175 | False | Siphoviridae | VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204, VOG0198, VOG4714 |
| HDLLFFKJ_74 | 1373 | 30910 | False | Siphoviridae | VOG8294, VOG0641, VOG0648, VOG9888, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG6542, VOG9503, VOG0689, VOG8945, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)