Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LGEPEOFB_28 | 12060 | 11866 | CspA | 2.18e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LGEPEOFB_53 | 50872 | 51862 | repUS67 | 1008 / 1039 | 85.52 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LGEPEOFB_3 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_4 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_12 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_14 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_15 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_26 | 1.0 | 0.0 | 1.0 |
| LGEPEOFB_27 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_28 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_29 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_30 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_31 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_32 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_33 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_34 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_35 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_36 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_37 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_38 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_39 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_40 | 1.0 | 0.0 | 1.0 |
| LGEPEOFB_41 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_42 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_43 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_44 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_45 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_46 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_47 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_48 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_49 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_50 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_51 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_52 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_53 | 1.0 | 0.0 | 1.0 |
| LGEPEOFB_54 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_55 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_56 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_57 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_58 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_59 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_60 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_61 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_62 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_63 | 1.0 | 0.0 | 1.0 |
| LGEPEOFB_64 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_65 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_66 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_67 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_69 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_70 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_71 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_72 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_73 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_74 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_75 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_76 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_77 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_78 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_80 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_81 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_90 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_100 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_108 | 1.0 | 0.0 | 1.0 |
| LGEPEOFB_109 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_110 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_111 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_112 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_125 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_133 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_141 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_142 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_149 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_151 | 0.0 | 1.0 | 0.0 |
| LGEPEOFB_159 | 1.0 | 0.0 | 1.0 |
| LGEPEOFB_167 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LGEPEOFB_53 | 58379 | 78820 | False | Siphoviridae | VOG5721, VOG6031, VOG6524, VOG6246, VOG1026, VOG6941, VOG6036, VOG7629, VOG7628, VOG5534, VOG4783, VOG10609, VOG9226, VOG0648, VOG0753, VOG0054 |
| LGEPEOFB_55 | 26016 | 56585 | False | Siphoviridae | VOG0703, VOG8917, VOG2315, VOG4663, VOG5924, VOG4910, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG4555, VOG7533, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198, VOG3307, VOG7043, VOG1183, VOG3307, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG8222, VOG0321 |
| LGEPEOFB_58 | 1783 | 27592 | False | Siphoviridae | VOG4693, VOG7111, VOG0198, VOG3699, VOG10227, VOG5821, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG0701, VOG5793, VOG0801, VOG4619, VOG5615 |
| LGEPEOFB_64 | 26012 | 30595 | False | Myoviridae | VOG8520, VOG5063, VOG3547, VOG8611, VOG5878, VOG7341, VOG4012, VOG1309 |
| LGEPEOFB_151 | 17113 | 44561 | False | Siphoviridae | VOG4010, VOG5280, VOG5317, VOG0686, VOG0198, VOG0866, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG4887 |
Phigaro v2.4.0 (Database: Jan. 2024 release)