Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CFCIMELG_69 | 33872 | 34066 | CspA | 4.74e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CFCIMELG_7 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_18 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_19 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_24 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_38 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_39 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_54 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_55 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_57 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_58 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_59 | 1.0 | 0.0 | 1.0 |
| CFCIMELG_60 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_61 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_62 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_63 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_64 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_65 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_66 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_68 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_69 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_70 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_71 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_72 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_73 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_74 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_75 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_76 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_77 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_79 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_80 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_81 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_82 | 0.0 | 1.0 | 0.0 |
| CFCIMELG_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CFCIMELG_66 | 7383 | 31483 | False | Siphoviridae | VOG0638, VOG0686, VOG0198, VOG0866, VOG4841, VOG4581, VOG4544, VOG0202, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG0801, VOG3462, VOG8438 |
| CFCIMELG_80 | 56354 | 71007 | False | Siphoviridae | VOG0267, VOG3349, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204, VOG0198, VOG4714 |
Phigaro v2.4.0 (Database: Jan. 2024 release)