Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JBMIFEJI_31 | 12056 | 11862 | CspA | 2.18e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JBMIFEJI_41 | 50872 | 51862 | repUS67 | 1008 / 1039 | 85.52 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JBMIFEJI_3 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_6 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_14 | 1.0 | 0.0 | 1.0 |
| JBMIFEJI_16 | 1.0 | 0.0 | 1.0 |
| JBMIFEJI_17 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_18 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_23 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_28 | 1.0 | 0.0 | 1.0 |
| JBMIFEJI_29 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_30 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_31 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_32 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_33 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_34 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_36 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_37 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_38 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_39 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_40 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_41 | 1.0 | 0.0 | 1.0 |
| JBMIFEJI_42 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_43 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_44 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_45 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_46 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_47 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_48 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_49 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_50 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_51 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_52 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_53 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_54 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_55 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_56 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_58 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_59 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_60 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_61 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_62 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_63 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_64 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_66 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_67 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_68 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_69 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_70 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_71 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_72 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_73 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_74 | 1.0 | 0.0 | 1.0 |
| JBMIFEJI_75 | 1.0 | 0.0 | 1.0 |
| JBMIFEJI_76 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_77 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_78 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_80 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_81 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_82 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_83 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_84 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_85 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_90 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_91 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_100 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_101 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_118 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_128 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_129 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_141 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_142 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_164 | 0.0 | 1.0 | 0.0 |
| JBMIFEJI_166 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JBMIFEJI_41 | 58379 | 78805 | False | Siphoviridae | VOG5721, VOG6031, VOG6524, VOG6246, VOG1026, VOG6941, VOG6036, VOG7629, VOG7628, VOG5534, VOG4783, VOG10609, VOG9226, VOG0648, VOG0753, VOG0054 |
| JBMIFEJI_50 | 45756 | 71565 | False | Siphoviridae | VOG8917, VOG5615, VOG4619, VOG0801, VOG5793, VOG0701, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG5821, VOG10227, VOG3699, VOG0198, VOG7111 |
| JBMIFEJI_54 | 6568 | 37137 | False | Siphoviridae | VOG0321, VOG8222, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG3307, VOG1183, VOG7043, VOG3307, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG7533, VOG4555, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG4910, VOG5924, VOG4663, VOG2315, VOG8917 |
| JBMIFEJI_58 | 4874 | 9457 | False | Myoviridae | VOG0186, VOG1309, VOG4012, VOG7341, VOG5878, VOG8611, VOG3547, VOG5063 |
| JBMIFEJI_91 | 21865 | 49313 | False | Siphoviridae | VOG4887, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866, VOG0198, VOG0686, VOG5317, VOG5280 |
Phigaro v2.4.0 (Database: Jan. 2024 release)