Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HFNEBIIC_59 | 6343 | 6149 | CspA | 6.85e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HFNEBIIC_12 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_13 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_14 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_20 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_29 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_39 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_42 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_43 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_44 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_49 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_56 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_57 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_58 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_59 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_60 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_61 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_62 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_63 | 1.0 | 0.0 | 1.0 |
| HFNEBIIC_64 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_65 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_66 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_67 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_69 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_70 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_71 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_72 | 1.0 | 0.0 | 1.0 |
| HFNEBIIC_73 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_74 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_75 | 1.0 | 0.0 | 1.0 |
| HFNEBIIC_76 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_77 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_78 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_80 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_81 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_82 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_83 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_84 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_85 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_86 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_87 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_88 | 1.0 | 0.0 | 1.0 |
| HFNEBIIC_89 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_91 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_92 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_93 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_94 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_95 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_96 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_103 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_108 | 1.0 | 0.0 | 1.0 |
| HFNEBIIC_122 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_129 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_146 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_147 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_171 | 1.0 | 0.0 | 1.0 |
| HFNEBIIC_172 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_173 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_181 | 0.0 | 1.0 | 0.0 |
| HFNEBIIC_182 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HFNEBIIC_74 | 3630 | 28237 | False | Siphoviridae | VOG0054, VOG1637, VOG4856, VOG10972, VOG0801, VOG4545, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4568, VOG4556, VOG1886, VOG4581, VOG4841, VOG4570, VOG0198, VOG4606 |
| HFNEBIIC_77 | 7254 | 11074 | False | Unknown | VOG4763, VOG1309, VOG0186, VOG9438 |
| HFNEBIIC_77 | 15062 | 37982 | False | Siphoviridae | VOG3307, VOG1183, VOG4693, VOG6140, VOG0198, VOG0686, VOG5262, VOG0376, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG5660, VOG0799, VOG0725, VOG1001, VOG0801, VOG3462 |
| HFNEBIIC_83 | 6048 | 9877 | False | Unknown | VOG4544, VOG4581, VOG4841 |
Phigaro v2.4.0 (Database: Jan. 2024 release)