Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LKCPFIDO_214 | 1336 | 1821 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LKCPFIDO_214 | 1336 | 1821 | lnu(A) | Lincomycin | 98.56 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LKCPFIDO_214 | 1339 | 1821 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LKCPFIDO_149 | 7151 | 6957 | CspA | 1.26e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LKCPFIDO_3 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_4 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_11 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_13 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_15 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_16 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_17 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_18 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_19 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_20 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_28 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_46 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_48 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_49 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_50 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_53 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_56 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_57 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_58 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_61 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_62 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_66 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_69 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_70 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_84 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_85 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_86 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_87 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_90 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_96 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_97 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_99 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_101 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_102 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_103 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_104 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_105 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_106 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_107 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_113 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_116 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_117 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_120 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_121 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_122 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_123 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_130 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_131 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_132 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_133 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_141 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_142 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_143 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_145 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_147 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_148 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_149 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_150 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_151 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_152 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_153 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_154 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_155 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_156 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_158 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_159 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_160 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_161 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_162 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_163 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_164 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_165 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_166 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_167 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_168 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_169 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_170 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_171 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_172 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_173 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_174 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_175 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_176 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_177 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_178 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_179 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_180 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_181 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_182 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_183 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_184 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_185 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_186 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_187 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_188 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_189 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_191 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_192 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_193 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_194 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_195 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_196 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_197 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_198 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_199 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_200 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_202 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_203 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_204 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_205 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_206 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_207 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_208 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_209 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_210 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_211 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_213 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_214 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_215 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_216 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_217 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_218 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_219 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_221 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_222 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_223 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_224 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_225 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_231 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_235 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_237 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_239 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_242 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_243 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_244 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_245 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_250 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_252 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_253 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_254 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_268 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_269 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_270 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_271 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_279 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_280 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_281 | 1.0 | 0.0 | 1.0 |
| LKCPFIDO_282 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_295 | 0.0 | 1.0 | 0.0 |
| LKCPFIDO_296 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LKCPFIDO_113 | 5220 | 12873 | False | Myoviridae | VOG0083, VOG0382, VOG0384, VOG10104, VOG0226 |
| LKCPFIDO_199 | 1764 | 19191 | True | Siphoviridae | VOG4548, VOG0198, VOG6154, VOG4581, VOG4571, VOG4544, VOG6875, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG0221, VOG0221, VOG0221 |
| LKCPFIDO_218 | 2701 | 9981 | False | Siphoviridae | VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9502 |
| LKCPFIDO_218 | 27764 | 30593 | False | Unknown | VOG0052, VOG7438, VOG1047 |
| LKCPFIDO_219 | 3518 | 28950 | False | Siphoviridae | VOG0866, VOG9331, VOG0866, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG1975, VOG8438, VOG3390, VOG4705, VOG8917, VOG0703, VOG8294 |
| LKCPFIDO_219 | 44489 | 45474 | False | Unknown | VOG5063 |
| LKCPFIDO_219 | 46169 | 56005 | False | Myoviridae / Siphoviridae | VOG5420, VOG0283, VOG0514, VOG0226, VOG5046, VOG0189, VOG0536, VOG0275, VOG4821 |
Phigaro v2.4.0 (Database: Jan. 2024 release)