Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FMAKLLAC_377 | 550 | 1035 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FMAKLLAC_377 | 550 | 1035 | lnu(A) | Lincomycin | 98.56 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FMAKLLAC_377 | 553 | 1035 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FMAKLLAC_76 | 6187 | 5993 | CspA | 1.20e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FMAKLLAC_8 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_9 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_10 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_32 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_33 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_34 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_72 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_73 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_74 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_75 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_76 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_77 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_87 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_90 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_92 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_98 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_99 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_107 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_109 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_116 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_117 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_118 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_119 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_131 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_136 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_137 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_138 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_139 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_140 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_154 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_155 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_157 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_158 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_159 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_160 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_168 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_172 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_176 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_179 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_190 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_193 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_194 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_195 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_196 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_197 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_218 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_219 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_220 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_242 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_258 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_260 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_262 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_263 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_272 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_280 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_281 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_283 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_284 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_285 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_286 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_287 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_288 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_289 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_291 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_292 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_293 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_294 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_295 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_296 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_297 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_298 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_299 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_300 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_301 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_302 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_303 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_304 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_305 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_306 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_307 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_308 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_309 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_310 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_311 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_313 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_314 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_315 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_316 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_317 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_318 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_320 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_321 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_322 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_324 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_325 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_326 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_327 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_328 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_329 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_330 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_331 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_332 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_333 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_336 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_337 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_338 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_339 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_340 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_341 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_342 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_343 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_344 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_345 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_347 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_348 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_349 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_350 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_351 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_352 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_353 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_354 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_355 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_356 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_358 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_359 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_360 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_361 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_362 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_363 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_364 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_365 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_366 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_367 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_369 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_370 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_371 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_372 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_373 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_374 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_375 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_376 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_377 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_378 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_380 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_381 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_382 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_383 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_384 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_385 | 1.0 | 0.0 | 1.0 |
| FMAKLLAC_386 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_404 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_405 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_406 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_430 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_431 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_440 | 0.0 | 1.0 | 0.0 |
| FMAKLLAC_444 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FMAKLLAC_366 | 1764 | 19191 | True | Siphoviridae | VOG4548, VOG0198, VOG6154, VOG4581, VOG4571, VOG4544, VOG6875, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG0221, VOG0221, VOG0221 |
| FMAKLLAC_374 | 19360 | 27243 | False | Myoviridae | VOG4564, VOG0226, VOG10104, VOG0384, VOG0382, VOG0083 |
| FMAKLLAC_384 | 6284 | 9113 | False | Unknown | VOG0021, VOG1047, VOG7438 |
| FMAKLLAC_384 | 25326 | 34176 | True | Siphoviridae | VOG0221, VOG0221, VOG9502, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573 |
| FMAKLLAC_385 | 7909 | 8894 | False | Unknown | VOG4552 |
| FMAKLLAC_385 | 24454 | 49886 | False | Siphoviridae | VOG5976, VOG8294, VOG0703, VOG8917, VOG4705, VOG3390, VOG8438, VOG1975, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866, VOG9331, VOG0866 |
Phigaro v2.4.0 (Database: Jan. 2024 release)