Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AAPHHCDG_179 | 2824 | 3309 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AAPHHCDG_179 | 2824 | 3309 | lnu(A) | Lincomycin | 98.56 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AAPHHCDG_179 | 2824 | 3306 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AAPHHCDG_78 | 6171 | 5977 | CspA | 1.20e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AAPHHCDG_3 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_4 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_5 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_12 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_16 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_17 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_18 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_19 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_20 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_21 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_24 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_29 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_30 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_31 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_45 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_47 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_48 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_51 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_53 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_54 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_55 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_57 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_61 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_65 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_66 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_67 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_68 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_71 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_75 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_76 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_77 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_78 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_80 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_93 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_94 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_99 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_105 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_108 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_109 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_110 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_111 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_112 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_113 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_114 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_115 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_116 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_122 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_124 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_127 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_128 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_129 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_130 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_134 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_139 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_140 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_141 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_148 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_150 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_152 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_153 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_154 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_155 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_156 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_158 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_159 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_160 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_161 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_162 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_163 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_164 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_165 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_166 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_167 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_168 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_169 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_170 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_171 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_172 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_173 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_174 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_175 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_176 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_177 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_178 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_179 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_180 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_181 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_182 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_183 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_184 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_185 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_186 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_187 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_188 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_189 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_190 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_191 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_192 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_193 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_194 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_195 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_196 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_197 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_198 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_199 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_200 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_201 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_202 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_203 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_204 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_205 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_206 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_207 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_208 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_209 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_210 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_211 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_212 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_213 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_214 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_215 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_216 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_217 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_218 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_219 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_220 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_221 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_222 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_223 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_224 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_225 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_226 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_227 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_228 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_229 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_238 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_239 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_243 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_244 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_245 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_246 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_247 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_250 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_253 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_254 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_255 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_256 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_257 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_271 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_273 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_274 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_275 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_282 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_284 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_285 | 1.0 | 0.0 | 1.0 |
| AAPHHCDG_286 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_287 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_288 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_289 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_290 | 0.0 | 1.0 | 0.0 |
| AAPHHCDG_294 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AAPHHCDG_20 | 3518 | 27706 | False | Siphoviridae | VOG0866, VOG9331, VOG0866, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG1975, VOG8438, VOG3390, VOG4705, VOG8917 |
| AAPHHCDG_130 | 15865 | 23748 | False | Myoviridae | VOG0083, VOG0382, VOG0384, VOG10104, VOG0226 |
| AAPHHCDG_172 | 20749 | 29599 | True | Siphoviridae | VOG0221, VOG0221, VOG9502, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573 |
| AAPHHCDG_210 | 1764 | 19191 | True | Siphoviridae | VOG4548, VOG0198, VOG6154, VOG4581, VOG4571, VOG4544, VOG6875, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG0221, VOG0221, VOG0221 |
Phigaro v2.4.0 (Database: Jan. 2024 release)