Probiotic potential risk score


ARGs VFs PGs PPRS
0011.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
GOMMCPHP_577246472658CspA1.12e-28cold shock protein84.6198.48CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
GOMMCPHP_80.01.00.0
GOMMCPHP_220.01.00.0
GOMMCPHP_230.01.00.0
GOMMCPHP_370.01.00.0
GOMMCPHP_380.01.00.0
GOMMCPHP_390.01.00.0
GOMMCPHP_400.01.00.0
GOMMCPHP_410.01.00.0
GOMMCPHP_420.01.00.0
GOMMCPHP_431.00.01.0
GOMMCPHP_440.01.00.0
GOMMCPHP_451.00.01.0
GOMMCPHP_470.01.00.0
GOMMCPHP_480.01.00.0
GOMMCPHP_490.01.00.0
GOMMCPHP_500.01.00.0
GOMMCPHP_510.01.00.0
GOMMCPHP_521.00.01.0
GOMMCPHP_531.00.01.0
GOMMCPHP_540.01.00.0
GOMMCPHP_550.01.00.0
GOMMCPHP_560.01.00.0
GOMMCPHP_570.01.00.0
GOMMCPHP_581.00.01.0
GOMMCPHP_590.01.00.0
GOMMCPHP_600.01.00.0
GOMMCPHP_610.01.00.0
GOMMCPHP_620.01.00.0
GOMMCPHP_630.01.00.0
GOMMCPHP_640.01.00.0
GOMMCPHP_650.01.00.0
GOMMCPHP_660.01.00.0
GOMMCPHP_670.01.00.0
GOMMCPHP_690.01.00.0
GOMMCPHP_700.01.00.0
GOMMCPHP_711.00.01.0
GOMMCPHP_720.01.00.0
GOMMCPHP_731.00.01.0
GOMMCPHP_740.01.00.0
GOMMCPHP_750.01.00.0
GOMMCPHP_820.01.00.0
GOMMCPHP_830.01.00.0
GOMMCPHP_890.01.00.0
GOMMCPHP_960.01.00.0
GOMMCPHP_1060.01.00.0
GOMMCPHP_1130.01.00.0
GOMMCPHP_1250.01.00.0
GOMMCPHP_1330.01.00.0
GOMMCPHP_1340.01.00.0
GOMMCPHP_1431.00.01.0
GOMMCPHP_1550.01.00.0
GOMMCPHP_1570.01.00.0
GOMMCPHP_1580.01.00.0
GOMMCPHP_1590.01.00.0
GOMMCPHP_1600.01.00.0
GOMMCPHP_1640.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
GOMMCPHP_42880017505FalseSiphoviridaeVOG4714, VOG0204, VOG0198, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841
GOMMCPHP_72114628439FalseSiphoviridaeVOG4856, VOG9997, VOG1050, VOG10972, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG1353, VOG4713, VOG1329, VOG4555, VOG0638, VOG4564, VOG0720, VOG10227, VOG4618, VOG1422, VOG8453, VOG0198, VOG4039
GOMMCPHP_73225823651FalseSiphoviridaeVOG9997, VOG3405, VOG10972, VOG3462, VOG0801, VOG6163, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG0866, VOG9312
GOMMCPHP_75431611193FalseSiphoviridaeVOG4566, VOG0186, VOG1309, VOG11003, VOG9667, VOG5878, VOG4552, VOG6495, VOG9667, VOG4602, VOG0682

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements