Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GLNIIMHG_108 | 66258 | 66452 | CspA | 1.03e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GLNIIMHG_3 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_4 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_8 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_9 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_10 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_11 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_12 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_14 | 1.0 | 0.0 | 1.0 |
| GLNIIMHG_15 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_16 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_17 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_18 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_19 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_20 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_21 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_22 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_23 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_25 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_26 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_27 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_28 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_29 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_30 | 1.0 | 0.0 | 1.0 |
| GLNIIMHG_31 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_32 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_33 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_34 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_35 | 1.0 | 0.0 | 1.0 |
| GLNIIMHG_36 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_37 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_38 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_39 | 1.0 | 0.0 | 1.0 |
| GLNIIMHG_40 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_41 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_50 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_51 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_52 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_53 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_56 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_63 | 1.0 | 0.0 | 1.0 |
| GLNIIMHG_64 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_67 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_70 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_74 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_75 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_76 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_83 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_84 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_90 | 1.0 | 0.0 | 1.0 |
| GLNIIMHG_99 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_101 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_106 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_107 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_108 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_121 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_122 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_127 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_128 | 0.0 | 1.0 | 0.0 |
| GLNIIMHG_129 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GLNIIMHG_32 | 13646 | 40812 | False | Siphoviridae | VOG8294, VOG0641, VOG0648, VOG9888, VOG10608, VOG1335, VOG6163, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG6542, VOG9503, VOG0689, VOG0686 |
| GLNIIMHG_32 | 51950 | 63944 | False | Siphoviridae | VOG5878, VOG8611, VOG1638, VOG2776, VOG7581, VOG9667, VOG4602, VOG3304, VOG0047, VOG0682, VOG0348, VOG4567, VOG10328, VOG0275, VOG0822, VOG4730 |
Phigaro v2.4.0 (Database: Jan. 2024 release)