Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GELMKAEK_58 | 7301 | 7495 | CspA | 1.73e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GELMKAEK_3 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_7 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_8 | 1.0 | 0.0 | 1.0 |
| GELMKAEK_9 | 1.0 | 0.0 | 1.0 |
| GELMKAEK_10 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_11 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_12 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_13 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_14 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_15 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_16 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_17 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_18 | 1.0 | 0.0 | 1.0 |
| GELMKAEK_19 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_20 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_21 | 1.0 | 0.0 | 1.0 |
| GELMKAEK_22 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_23 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_24 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_25 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_26 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_27 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_28 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_29 | 1.0 | 0.0 | 1.0 |
| GELMKAEK_30 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_31 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_32 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_33 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_34 | 1.0 | 0.0 | 1.0 |
| GELMKAEK_36 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_37 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_38 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_39 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_40 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_41 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_46 | 1.0 | 0.0 | 1.0 |
| GELMKAEK_53 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_57 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_58 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_60 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_61 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_62 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_63 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_72 | 1.0 | 0.0 | 1.0 |
| GELMKAEK_78 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_81 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_83 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_84 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_85 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_92 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_94 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_95 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_100 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_101 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_102 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_109 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_110 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_113 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_115 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_116 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_117 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_118 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_119 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_128 | 0.0 | 1.0 | 0.0 |
| GELMKAEK_135 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GELMKAEK_39 | 43956 | 77873 | False | Siphoviridae | VOG8917, VOG7896, VOG4334, VOG10593, VOG2621, VOG4687, VOG3462, VOG0801, VOG4545, VOG7714, VOG0725, VOG0799, VOG0724, VOG1353, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG1517, VOG4571, VOG4618, VOG8453, VOG8427, VOG0198, VOG6140, VOG0536, VOG1183, VOG9927, VOG0686, VOG4552, VOG0536, VOG8647, VOG0514, VOG0226, VOG0322, VOG0535 |
Phigaro v2.4.0 (Database: Jan. 2024 release)