Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PKLBHJAN_85 | 59233 | 59039 | CspA | 1.52e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PKLBHJAN_106 | 11006 | 11910 | rep38 | 917 / 1104 | 80.04 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PKLBHJAN_6 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_7 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_14 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_15 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_19 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_20 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_22 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_23 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_24 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_25 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_31 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_37 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_38 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_39 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_40 | 1.0 | 0.0 | 1.0 |
| PKLBHJAN_41 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_42 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_43 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_44 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_45 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_47 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_48 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_49 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_50 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_51 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_52 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_53 | 1.0 | 0.0 | 1.0 |
| PKLBHJAN_54 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_55 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_56 | 1.0 | 0.0 | 1.0 |
| PKLBHJAN_58 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_59 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_60 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_61 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_62 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_63 | 1.0 | 0.0 | 1.0 |
| PKLBHJAN_64 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_65 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_66 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_67 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_69 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_70 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_71 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_72 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_73 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_74 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_75 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_76 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_77 | 1.0 | 0.0 | 1.0 |
| PKLBHJAN_78 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_80 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_81 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_82 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_83 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_84 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_85 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_86 | 1.0 | 0.0 | 1.0 |
| PKLBHJAN_87 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_88 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_89 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_90 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_91 | 1.0 | 0.0 | 1.0 |
| PKLBHJAN_92 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_93 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_94 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_95 | 1.0 | 0.0 | 1.0 |
| PKLBHJAN_96 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_97 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_98 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_99 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_100 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_102 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_103 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_104 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_105 | 1.0 | 0.0 | 1.0 |
| PKLBHJAN_106 | 1.0 | 0.0 | 1.0 |
| PKLBHJAN_107 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_108 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_109 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_110 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_111 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_114 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_115 | 1.0 | 0.0 | 1.0 |
| PKLBHJAN_116 | 1.0 | 0.0 | 1.0 |
| PKLBHJAN_117 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_118 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_122 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_123 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_124 | 1.0 | 0.0 | 1.0 |
| PKLBHJAN_126 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_127 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_128 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_135 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_136 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_137 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_138 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_144 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_145 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_146 | 1.0 | 0.0 | 1.0 |
| PKLBHJAN_147 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_155 | 1.0 | 0.0 | 1.0 |
| PKLBHJAN_156 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_164 | 1.0 | 0.0 | 1.0 |
| PKLBHJAN_165 | 1.0 | 0.0 | 1.0 |
| PKLBHJAN_166 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_168 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_169 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_171 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_172 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_173 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_183 | 0.0 | 1.0 | 0.0 |
| PKLBHJAN_189 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PKLBHJAN_45 | 11903 | 40534 | False | Siphoviridae | VOG4693, VOG0198, VOG3477, VOG0796, VOG0376, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1900, VOG0704, VOG4634, VOG1333, VOG1334, VOG6163, VOG1335, VOG10608, VOG9888, VOG0648 |
| PKLBHJAN_71 | 42637 | 70641 | False | Siphoviridae | VOG1637, VOG9998, VOG4705, VOG4334, VOG4856, VOG9997, VOG1050, VOG10972, VOG3462, VOG0801, VOG6163, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866 |
| PKLBHJAN_71 | 93981 | 104976 | False | Siphoviridae | VOG6214, VOG4010, VOG6495, VOG5474, VOG4693, VOG1183, VOG4566, VOG0514, VOG0226, VOG4955, VOG5692, VOG7812, VOG3478, VOG0707, VOG9469, VOG1564, VOG8520, VOG8520, VOG4602, VOG6914 |
Phigaro v2.4.0 (Database: Jan. 2024 release)